Prevotella sp. oral taxon 299: HMPREF0669_01252
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Entry
HMPREF0669_01252 CDS
T02809
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pro
Prevotella sp. oral taxon 299
Pathway
pro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0669_01252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pro03019
]
HMPREF0669_01252
03400 DNA repair and recombination proteins [BR:
pro03400
]
HMPREF0669_01252
Enzymes [BR:
pro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0669_01252
Messenger RNA biogenesis [BR:
pro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMPREF0669_01252
DNA repair and recombination proteins [BR:
pro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMPREF0669_01252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
RQC
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HTH_40
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
EFC70797
UniProt:
D3ICU8
LinkDB
All DBs
Position
unnamed:31867..34044
Genome browser
AA seq
725 aa
AA seq
DB search
MTKALNLTEKLKQYFGFDTFKGDQEAIIRNLLDGKDSFVLMPTGGGKSLCYQLPSLIMDG
VAVVISPLIALMKNQVDVINGISEENGVAHYINSSLNKAAITQVMADIRSGKTKLLYVAP
ESLIKPENVEFLKTVKISFYAIDEAHCISEWGHDFRPEYRNIRPMINNIGEAPVIALTAT
ATDKVRTDIKKSLGILDAKEFKSSFNRANLYYEVRPKTNDVDKELIKFIKKNEGKSGIVY
CLSRKKVEELSAILQANNIKAAAYHAGLDNIPRSQTQDDFLMERIDVIVATIAFGMGIDK
PDVRFVVHYDIPKSLEGYYQETGRAGRDGGEGHCLAFYSYKDIQKLEKFMEGKPVAEQDI
GRQLLKETAAYAESSVCRRKMLLHYFGEEYPKENCGNCDNCNRPAKKNEAQQALEIVLRT
IVALKENFRQEYIIDVVTGKATDDVVSHRHEQLEVFGEGADESSKIWNPVIRQALISGYI
KKNIENYGILKITEKGKKFIKNPHSFMIVEDVDFDNIDYDAVSEGKISALDEDLYHILKP
LRAKVAKRHNLPPYVIFQDVSLEQMATMYPVNCQDLLNIQGVGEGKAKRYGKEFWERICE
YCKENDIIRPEEMRVRTIAKRSNAKLKIINSIDKQIALDDIANAMGLDFNELLTEIERIV
YSGTKVNIDYFLEDVMDDDCIESIYDYFRESETDCIEAALDEFDGSFDEDELRLVRIKFL
SEMAN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgactaaggcacttaatctaactgaaaagctaaagcaatattttggctttgacaccttt
aagggcgatcaagaagctataattagaaatcttcttgatggtaaggactcgtttgttctg
atgccaactggtggtggtaagagtctttgttaccaacttccatctctcattatggatgga
gttgcagttgttatatcgcccttaatagctctaatgaagaatcaagtagatgttattaac
ggtataagcgaagaaaatggagttgctcactatattaattcttcgttaaataaggcagca
ataacacaggtaatggcagacataaggagtggaaaaacaaaattattgtatgttgctcca
gagtcattgataaaacctgagaatgtagaattccttaaaacggttaagatttccttttat
gctatagacgaagcgcattgtatttcagagtggggacacgacttcagacctgaatatcgt
aacattcgaccaatgatcaacaatattggtgaggctccagttattgctcttactgctaca
gccacagataaagtgcgcaccgatatcaagaaaagtttaggcatattggatgctaaagaa
ttcaaaagctcatttaatcgtgccaatctttattacgaagtgcgtcctaaaaccaatgat
gttgataaagaactcatcaagtttataaagaagaacgaaggaaaaagcggaattgtttat
tgtctttcacgcaagaaagtagaagagctttcagctatattgcaagccaataacatcaag
gctgcagcctatcatgcaggactagataatattccaaggtctcaaacacaagacgatttc
ttaatggaacgcattgatgttattgtggcaacaattgcttttggaatgggaatagataag
cccgatgtgcgatttgtagtgcattatgatattccaaagagtctcgaaggatattatcaa
gagactggtcgtgcaggaagagatggcggagaaggacattgtttggcattctattcctat
aaagacatacagaaactcgagaaatttatggagggaaaacctgttgccgagcaagatatt
ggtaggcaactcttaaaggaaaccgccgcttatgcagagtcttctgtttgtagaagaaag
atgctgttacactattttggtgaagaatatcctaaagaaaactgtggaaattgcgataat
tgcaatcgtcctgcaaagaaaaatgaagctcaacaggcattagagatagttcttcggacc
atcgttgcgttgaaagagaattttagacaagagtatattatcgacgttgttacaggaaaa
gcaactgatgatgtagtttctcatcgacacgaacaattggaggtgtttggtgaaggtgca
gatgaatcctcaaaaatatggaaccctgttattaggcaagcattgatatcaggttatatc
aagaaaaatattgagaattatggcatcttgaaaattactgaaaagggaaagaaattcata
aaaaatcctcattctttcatgattgtagaagatgtcgattttgataatattgactatgat
gcagtgtctgaaggcaagatttctgctttagatgaagatttatatcacatattaaaacca
ctgagagctaaagtggcaaaacgccataatttgcccccatacgttatctttcaagacgtc
tctttagagcaaatggcaaccatgtatcctgtaaattgccaagatttgcttaacattcaa
ggagtaggagagggcaaagctaaacgctatggaaaagagttttgggagcgtatttgcgaa
tattgcaaagagaacgacattattagaccagaagaaatgcgtgtgagaaccattgccaaa
cgttcgaatgcaaaactaaagattatcaatagcattgataaacaaatagctttagatgat
attgctaatgcaatgggattagattttaacgaacttctcaccgagatagaacgcatagtg
tatagtggaactaaagtgaatattgattatttcttagaagatgtgatggatgatgattgc
attgaatcgatttacgactattttagagagagtgaaacagattgcatcgaagctgcatta
gatgagtttgatggtagttttgatgaagatgaattgcgcttagtacgcattaaattcttg
tcggagatggcaaactaa
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