Prevotella sp. oral taxon 299: HMPREF0669_01477
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Entry
HMPREF0669_01477 CDS
T02809
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pro
Prevotella sp. oral taxon 299
Pathway
pro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0669_01477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pro03021
]
HMPREF0669_01477
03400 DNA repair and recombination proteins [BR:
pro03400
]
HMPREF0669_01477
Enzymes [BR:
pro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0669_01477
Transcription machinery [BR:
pro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0669_01477
DNA repair and recombination proteins [BR:
pro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0669_01477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
T4_y05I_C
Motif
Other DBs
NCBI-ProteinID:
EFC70497
LinkDB
All DBs
Position
662752..666561
Genome browser
AA seq
1269 aa
AA seq
DB search
MASKIVDNRINFASVHNPMPYPDFLDVQLKSFRDFLQLDTPPEERKNDGLYKVFAENFPI
TDTRNNFVLEFLDYYIDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFIQDV
FLGTIPYMTHNGTFVINGAERVVVAQLHRSPGVFFGQGVHANGTMLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKLPVTTLLRAIGYETDNDILQIFDLAEEVKVNKKVLKASIGRK
LAARVLKTWNEDFVDEDTGEVVSIERNEMIMDRETEITEENMEDILDSGCSTILLHKDSE
MANKYSLIFNTLAKDPSNTEKEAVNYIYRQLRNADPADDASAREVFQNLFFSDKRYDLGE
VGRYRINRKLGLEIDMDTRVLTKDDIIAIIRYLIQLINSNATVDDIDHLSNRRVRNVGEQ
LANQFSIGLARMSRTIRERMNVRDNEVFTPTDLINAKTISSVINSFFGTNPLSQFMDQTN
PLAEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCVYA
NINDLGFIVTPYRTVKDSKVEMDNKNVVYLTAEEENKIIGQGNAPLTVDGSFIRTTVKCR
QDADYPVVAPEHVDLVDVSPQQIASVSASLIPFLEHDDGHRALMGCNMMRQAVPLLHNDA
PIVGTGLEKKVCEDSRTMITAEGDGVIDYVDATTIRILYDRTEEEDFVSFEPALKEYRIP
KFRRTNQNMTIDLRPICTKGQRVKQGDILTEGYATENGELALGRNLLVAYMPWKGYNYED
AIVLSERIVRDDILTSVHVDEYSLDVRETKRGVEEFTSDIPNVSEEATKDLDDNGIVRVG
ARIEPGDILIGKISPKGESDPSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKLF
SRAIKTRETKKQDKVLLASLEEEYEAKNNDLKDILVDKLLVLTEDKVSEGVKDYTGAEIV
TKGSKFTTTILKNLEYDGIQAGGWTSDEHTNGLIKQLIMNYIHKYKLLDAELKRRKFAIS
IGDELPSGILQMAKVYIAKKRKIGVGDKLAGRHGNKGIVSKVVRMEDMPFLEDGRPVDLV
LNPLGVPSRMNLGQIFEAILGAAGKKLGVKFATPIFDGAKLDDLSEWTEKAGLPHLCSTH
LYDGETGEQFDQPATVGVTYFLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAFGASHVLQEILTVKSDDTVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELR
GLGLSIKLD
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaaaattgttgataatagaataaactttgcaagtgtgcataatccgatgcca
tatccggattttctcgacgtgcaattaaagtcctttagagacttcctacagttagatact
ccaccagaggagcgtaagaacgatggtttatacaaggtgtttgcagaaaacttccctata
accgacacacgtaacaatttcgttcttgagtttttagattattatatcgatcctcctcgt
tattcaattgacgagtgtctagagcgtggactaacatatagtgttcccttaaaggcaaag
atgaaattatattgtaccgacccagatcatgaagatttcggtacatttatccaagatgtt
ttcttgggtactatcccttatatgactcataatggaacttttgttattaatggagctgag
cgtgtagtagttgcccagttgcatcgttctcctggtgtcttcttcggacaaggcgttcat
gcaaatggtacaatgctttattctgctcgtatcattccattcaagggttcttggattgag
tttgcgaccgatataaacaacgtaatgtatgcttacatcgatcgtaaaaagaaattacct
gttacaactcttttgagagctatcggttatgaaacagataatgacattcttcaaattttt
gatttagccgaagaagttaaggttaataagaaagttttgaaggcatctattggtagaaag
ttggcagctcgtgtcttaaagacttggaatgaagactttgttgatgaagatacaggtgaa
gtagtttctatcgaacgtaatgagatgatcatggatcgtgagactgagattacagaagag
aatatggaagacatcttagatagtggctgttctaccatattgttacacaaagactcagaa
atggccaacaagtattctttgatttttaacacacttgctaaagatccaagtaatactgag
aaagaagccgttaactatatctatcgtcaattgcgtaatgcagatcctgcagacgatgca
agtgcacgtgaagtgttccaaaacctattcttctctgacaagcgttacgacttaggagaa
gtaggacgttatcgtatcaatcgtaagttaggacttgaaattgatatggatactcgtgtt
cttaccaaagatgacattattgcaattatacgttacttgattcagctaatcaattcgaat
gcaacagttgatgatatcgaccacctttcaaaccgaagagtgcgcaatgtaggcgaacaa
ttagctaatcaattctctataggattggctcgtatgagcagaacaatccgtgaacgtatg
aacgtacgtgacaatgaagtgtttacaccaacagatcttatcaatgctaagaccatttct
agtgtaatcaactcattcttcggaaccaacccattgtctcagttcatggaccaaaccaac
ccacttgctgaagtaactcacaaacgtcgtttgtcagctttaggtcctggtggtttgtct
cgtgagcgtgcaggcttcgaggttcgtgacgttcactacacacactatggtcgtttgtgt
ccaattgagagccctgaaggtccaaacattggtcttatctcatctctttgtgtatatgca
aacatcaacgatctaggatttattgtaactccttatcgtacagttaaggattcaaaagtt
gagatggacaacaaaaacgttgtttatcttacagctgaagaagaaaacaagattattggt
cagggaaatgctccactaacagtagatggttcatttatccgcacaaccgtaaaatgtcgt
caagatgccgactatccagttgtagcaccagagcatgttgatcttgtagacgtatcacct
caacagattgcttctgtttctgccagcttgattccattcttagaacatgatgacggtcac
cgtgctttgatgggatgtaacatgatgcgccaggcagttccactccttcataacgatgct
ccaattgtaggaacaggtttagaaaagaaagtttgtgaagattcacgaaccatgattact
gctgaaggagatggcgttattgactatgtagatgcaacaactatccgtattctttacgat
cgtacagaagaggaagatttcgtaagcttcgaaccagcgttaaaagaatatagaattcct
aagttccgtcgtaccaaccagaatatgaccatcgacttacgtcctatctgtacaaaggga
caaagagtaaaacaaggtgatattctaacagaaggatatgctacagaaaatggcgaatta
gctctaggacgtaaccttctcgttgcatatatgccttggaagggttataactatgaggac
gctattgtactaagtgagcgtattgttcgtgacgatattcttacatctgttcacgtagat
gagtattcattagacgtgagagaaacaaaacgtggtgttgaagaattcacaagcgatatt
ccaaacgtgagtgaagaagcaacaaaagatctcgacgataatggtattgttcgtgtaggt
gctcgcatcgaaccaggcgatatccttattggaaagatctctccaaagggagaaagcgat
ccttcaccagaagaaaagcttcttcgcgctatcttcggagataaagcaggtgatgttaaa
gactcttctttgaaagctaacccatcactaagtggtgttgttatcgataagaaactcttc
tcaagagctattaagactcgtgagaccaagaaacaagataaagttcttctagctagtctt
gaagaagaatacgaagcaaagaataacgacttaaaagatattcttgtagataaacttctt
gttcttacagaagataaagtatctgaaggagtaaaagattacacaggagctgaaatcgta
actaagggtagcaagttcacaacaacaatccttaagaaccttgaatatgatggtattcaa
gcaggaggttggacaagtgacgagcacacaaatggtcttatcaagcaattgataatgaac
tatatccacaaatacaaactcttagacgcagaattaaaacgtcgcaagttcgctatttct
attggagatgaacttccatcaggaatccttcaaatggcaaaagtttatattgctaagaag
cgtaagattggtgtaggtgataaacttgcaggtcgtcatggtaacaagggtatcgtatct
aaggttgttagaatggaagatatgccattcctagaggacggtcgtcctgtagacttggta
cttaacccacttggtgtgccttctcgtatgaaccttggacagatcttcgaagcgatttta
ggtgcagcaggtaaaaagctaggtgttaagtttgcaactccaatcttcgatggtgctaag
cttgatgacctttcagaatggaccgaaaaggcaggattgcctcacctatgttcaacacat
ctttacgatggagaaacaggagaacaattcgaccagcctgcaacagtaggtgtaacatac
ttcttgaaactcggacacatggtggaagacaagatgcatgcacgtagcattggtccatac
tctctcatcacacaacagccacttggtggtaaagcacaatttggtggacaacgttttgga
gagatggaagtttgggctcttgaagcatttggtgcaagtcacgtgttacaagagattcta
actgttaagtcagacgacaccgttggacgtagtaaagcttatgaagcaattgttaaaggt
gatccaatgccaacaccaggtatcccagaatcactcaatgtgttattgcacgagcttcga
ggcttaggcttaagtatcaagttggattaa
DBGET
integrated database retrieval system
