Protaetiibacter sp. SSC-01: H4J02_03190
Help
Entry
H4J02_03190 CDS
T09940
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
proa
Protaetiibacter sp. SSC-01
Brite
KEGG Orthology (KO) [BR:
proa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
proa03019
]
H4J02_03190 (hrpA)
Enzymes [BR:
proa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H4J02_03190 (hrpA)
Messenger RNA biogenesis [BR:
proa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H4J02_03190 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
T2SSE
ResIII
AAA_30
SLFN-g3_helicase
NACHT
PhoH
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QNO38048
UniProt:
A0A7G9XRP0
LinkDB
All DBs
Position
complement(675479..679252)
Genome browser
AA seq
1257 aa
AA seq
DB search
MSATSTPAYHISYPPELPVSQAHDELADAIRDHQVVVVAGATGSGKTTQLPKICLELGRE
RIGHTQPRRIAARSIAERIASELGVDLGTVVGYQVRFDDRTRTDTAIKLMTDGVLLAELS
RDRELRAYDTIIIDEAHERSLTIDFLLGYLTRLLPRRPDLKVIVTSATIDPESFARHFSN
AIGAEVPVIEVSGRTYPVEIRYRPLVAEAGDDSDDAEDEGAASSDRDVAQGIVDALAELE
REEAGDVLVFLSGESEIRDAADVVRGRFPKDEVVPLYGRLSAADQHRVFDTRRAPGIRRR
VVIATNVAETSITVPGIRYVVDAGTARISRYSPRAKVQRLPIEAISQASANQRSGRAGRT
SPGIAIRLYSEDDFERRPEFTDPEILRTGLAAVILQMLELRLGDIREFPFLTPPDSRGIA
DGLDLLRELGAVDAEQRITRVGRDLARLPVDPRFGRMLVEAGQQGVVREVAAIVAGLSIQ
DPRERPLEMRPQADAAHARFRDPSSDFISLLNLWNHLEDEQKERSGNAFRRMCKAEYLNY
LRVREWQDLYRQLTRAAKSVGLKPGERSTDADAIHRSILAGLLSRLGLRDPDKKDYLGSR
GQRFVIFPGSGLAKKQPNAVMAAELVETSRLFARTVAAVDPAWAEKLAGDLAKRSYSEPH
WSSKQGAALVWEKVTLYGVPIVPRRRAQLARIDAPLARELFIRHALVEGDWPHELERSAL
LGFDRDNEKLRRELAEVEERTRRRDILTGDEAVFAFYDARIPDDVTDSRRFASWWKKAKA
ETPELLTMRREDLLEDDEGDASGFPDEWVQGDTRFRLRYRFEPGADDDGVTVVIPLAVLP
RVAERGFDWLVPGLRDELLTALIKALPKAIRKNVVPAADWARRLGAQLPVYSDAPVGEAL
ADAIRAATHTPVAASDIEWDRVPPHLRMRYEVVDQRGRTLAAGRDLAALQKRLAERARTD
VAVATAAATPGRDIERTGITEWDLGKLPEQVTAKQGGSTVVGYPALVDTGSGVDLKVFAS
RAQAEASQVRGVHRLVALTLPSPLGYVQDQLTGTEKLLLATAPYASTRALLDDIMIAVVE
ELAGDASPRTPDGFRALQETVNAGLVDALFGAAGLVARILGAAKDADKAISSASSLAFMG
SLGDARSQLAALVHPGFVRRAGLAQLRRYPVYLAGIVFRVQKLAENPGRDRAWQSQVEEV
TALYTKAGGALPHAGNTPPRLVAVRWMLEELRLSLFAQHLGAAGPVSVQRIRKALES
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccacgtccacgcccgcgtaccacatctcgtacccgccggagctgcccgtcagc
caggcgcacgacgagctcgccgacgccatccgcgaccaccaggtcgtcgtcgtcgcgggc
gccaccggctcgggcaagacgacgcagctgcccaagatctgcctcgagctcgggcgcgag
cgcatcgggcacacccagccacgtcggatcgcggcgcgctcgatcgccgagcgcatcgca
tccgagctgggcgtcgacctcggaaccgtcgtcggctaccaggtgcgcttcgacgaccgc
acgcgcaccgacaccgcgatcaagctcatgaccgacggcgtgctgctcgccgaactctcg
cgcgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcgcacgagcgatcg
ctcacgatcgacttcctgctcggctacctcacccggctgctcccccgccgccccgacctc
aaggtcatcgtcacctcggcgacgatcgaccccgagagcttcgcgcgccacttctcgaac
gccatcggcgccgaggtgcccgtcatcgaggtgtcgggccgcacctaccccgtcgagatc
cgctaccggccgctcgtcgccgaggcgggcgacgattccgacgacgccgaggacgagggt
gccgcctcctccgaccgggatgtcgcgcagggcatcgtcgacgcgctcgccgagctcgag
cgcgaggaggcgggcgacgtgctcgtgttcctctcgggggagtcggagatccgggatgcc
gcggacgtcgtgcgcggacggttccccaaggacgaggtcgtgccgctctacggtcgcctc
tcggccgccgaccagcaccgcgtcttcgacacgcgacgcgcccccggcatccgtcgccgc
gtcgtgatcgccacgaacgtcgccgagacgagcatcacggtgcccggcatccgctatgtc
gtcgacgccggaacggcgcgcatcagccgctactcgccgcgcgccaaggtgcagcgcctg
ccgatcgaggcgatcagccaggcctccgccaaccagcgctcgggccgcgccggccgcacc
tcgccgggcatcgccatccgcctctactccgaggacgacttcgagcggcgccccgagttc
accgaccccgagatcctgcgcacggggctcgccgccgtcatcctgcagatgctcgagctg
cggctcggcgacatccgcgagttcccgttcctcaccccgcccgactcgcggggcatcgcc
gacggcctcgacctgctgcgcgagctcggcgcggtcgacgccgagcagcgcatcacgcgc
gtcggccgcgacctcgcgcgcctgcccgtcgacccgcgcttcgggcggatgctcgtggag
gccgggcagcagggcgtcgtgcgcgaggtggccgcgatcgtcgcgggcctctccatccag
gacccgcgcgagcgaccgctcgagatgcgaccccaggcggatgccgcgcacgcgcgtttc
cgcgacccctcgtcggacttcatctcgctcctcaacctctggaaccacctcgaggacgag
cagaaggagcgcagcggcaacgccttccgacgtatgtgcaaggcggaatatctcaactac
ctgcgcgtgcgcgagtggcaggacctctaccgccagctcacgcgcgcggccaagtcggtg
ggcctcaagcccggcgagcgctcgacggatgccgacgccatccaccgctcgatcctcgcg
gggctgctgtcgcggctcggcctgcgcgaccccgacaagaaggactacctcggctcgcgc
ggccagcgcttcgtgatcttccccggctcgggactcgcgaagaagcagccgaacgccgtc
atggccgccgagctcgtcgagacctcgcgcctcttcgcgcgcacggtcgccgcggtcgac
cccgcctgggccgagaagctcgcaggcgacctcgccaagcgctcgtactcggagccgcac
tggtcgagcaagcagggcgccgctctcgtgtgggagaaggtcacgctctacggcgtgccc
atcgtgccgcgtcggcgcgcccagctcgcccgcatcgacgcgcccctcgcgcgcgagctc
ttcatccggcacgcgctcgtcgagggcgactggccgcacgagctggagcgttcggcactg
ctcgggttcgaccgtgacaacgagaagctgcgccgcgagctcgccgaggtcgaggagcgc
acgcgccgccgcgacatcctcacgggcgacgaggccgtcttcgccttctacgacgcgcgg
atccccgacgacgtcaccgactcgcgccgcttcgcgagctggtggaagaaggcgaaggcc
gagacgcccgagctgctcacgatgcgccgcgaggacctcctcgaggacgacgagggcgac
gcatccggcttccccgacgagtgggtgcagggcgacacgcgcttccggctgcgctaccgc
ttcgagcccggcgccgacgacgacggcgtgaccgtcgtcatcccgctcgccgtgctgccg
cgcgtcgccgagcgcggcttcgactggctcgtgccgggcctgcgcgacgaactgctgacg
gcgctcatcaaggcgctgccgaaggcgatccgcaagaacgtcgtgccggcggccgactgg
gcgcggcggctgggcgcgcagctgccggtgtactcggacgcccccgtcggcgaggcgctc
gccgacgccatccgggcggcgacgcacacgcccgtcgcggcatccgacatcgagtgggac
cgtgtgccgccgcacctgcgcatgcgctacgaggtcgtcgaccagcgcgggcgcacgctc
gcggcggggcgcgacctcgccgcgctgcagaagcggctcgccgagcgcgcccgcacggat
gtcgcggtcgcgaccgccgcggcgacccccggccgcgacatcgagcgcacgggcatcacc
gagtgggacctcggcaagctgcccgagcaggtcaccgcgaagcagggcgggtcgaccgtg
gtcggctaccccgccctcgtcgacacgggctcgggcgtcgacctcaaggtgttcgcgagc
cgtgcgcaggccgaggcctcgcaggtgcgcggcgtgcaccgcctcgtcgcgctcaccctg
ccgagcccgctcggctacgttcaggaccagctcacgggcaccgagaagctgctgctcgcg
acggcgccgtacgcctcgacgagggcgctgctcgacgacatcatgatcgccgtcgtcgag
gagctcgcgggtgatgcctccccgcgcacgcccgacgggttccgtgcgctgcaggagacc
gtcaatgcgggactcgtggatgcgctgttcggcgccgcgggactcgtcgcgcgcatcctc
ggggccgcgaaggacgccgacaaggccatctcgtcggcgtcgagcctcgccttcatgggg
tctctcggcgacgcacggtcccagctcgccgcgctcgtgcatccggggttcgtgcggcgg
gcggggctcgcgcagctgcgccgctaccccgtgtacctcgcgggcatcgtgttccgtgtg
cagaagctcgccgagaaccccggccgcgaccgcgcgtggcagtcgcaggtcgaggaggtg
acggcgctctacacgaaggccggcggtgcgctgccgcacgcgggcaacaccccgccgagg
ctcgtcgcggtgcgctggatgctcgaggagctgcgcctctcgctcttcgcccagcacctc
ggcgccgccggccccgtctcggtgcaacgcatccgcaaggcgctggagtcgtag
DBGET
integrated database retrieval system
