Protaetiibacter sp. SSC-01: H4J02_10430
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Entry
H4J02_10430 CDS
T09940
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
proa
Protaetiibacter sp. SSC-01
Pathway
proa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
proa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H4J02_10430 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
proa03400
]
H4J02_10430 (mfd)
Enzymes [BR:
proa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H4J02_10430 (mfd)
DNA repair and recombination proteins [BR:
proa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H4J02_10430 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QNO36882
UniProt:
A0A7G9XNC4
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All DBs
Position
complement(2202024..2205596)
Genome browser
AA seq
1190 aa
AA seq
DB search
MGLASLIPVLARAHTFREALAEARSDADFSAVEGLRVPLLAGLLARRAEAAGRGQALLAI
TATSREAEAVAASFATWAPDALVLPFPAWETLPHERLSPSAETVGRRLRSLRQLRLWQDG
PRDRPLVLVASVRAALQPLAPGLDELEPIVLTQGGRGYELNSLATRLAELAYARVDLVTR
RGEFAVRGGILDVFPPDAEHPVRADFFGDELEQLRGFSVADQRSLPGDLGPVELGPAREL
LITDAVRGRAAELQHEYEAIGQMLAKIADGIPVEGMESLTPALVGRLVPITDYLPEDAAV
VVLSPERVATRALSLSETNREFLEAAWSAATAGGAAPIDLQASLDTGDFLTVSALRAEAR
PRTWWTVSPFDTDDDEVTRLDGRAIPSFAGSAEGAIGHVAALLKGEWSVAVAAAGAGLVD
RAAQVLAEREIAARVVDAVPSEPEPGVAYLVTASVEAGFEQDDARFALLSEAEFYGRAAG
IDSRQPKRLASRRRNVVDPLQLKPGDAVVHETHGIGRFVELVTREVAGGGRVSRGPLGTQ
HEKVTREYLVLEYAPSKRGQPGDRLYVPTDQLDQLSRYVGGENPALSKMGGSDWAAAKGK
ARKAVRDIAVELVKLYSARMASPGYAFSPDTPWQRELEEAFPFAETPDQLQTIDEVKADM
ERPIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVKQHLETFQERFAGF
PVHLRALSRFQTEKESKETIEGLERGEVDVVIGTHRILSEAVRFKDLGLVIIDEEQRFGV
EHKDALKKMKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTYVGPRSDK
QITAAIRRELLREGQVFFVHNRVSSINRVAAELAELVPEARIAVAHGKLTEHQLEQVIVD
FWERRFDVLVTTTIIETGIDIANANTLIIDQADKYGLSQLHQIRGRVGRGRERAYAYFLY
DPEKPLTETAQDRLETIATNNELGGGMQIALKDLEIRGAGNLLGGEQSGHIAGVGFDLYL
RMIGEAVSAFRGDVAEGQTELRLELPVDARIPEEYIESERLRLEAYQKLSTASAPLSPDD
TLDRVVEELTDRYGTPPEPVQQLVAVSRLRRQAQKAGLGEVVAMGGRMRLAPLDPPDSIQ
VRLTRMYPGVKFFAAQHAVNVPMPEGASDAELIEWVGQLLTAATGSAAQH
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
gtgggactcgcgtcattgattccggtgctcgcgcgcgcccataccttccgcgaggcgctc
gccgaggcccgctccgacgccgacttctcggcggtcgagggtctgcgcgttccgctgctc
gccggtctcctcgcgcgtcgcgcggaggccgccggtcgcggccaggcgctcctcgccatc
acggccacgagtcgcgaggccgaggccgtcgcggcgtcgttcgcgacgtgggcgcccgac
gcgctcgtgctcccgttcccggcgtgggagacgctcccgcacgagcggctgagcccgtcc
gccgagaccgtcggccgtcgcctgcgctcactccggcagttgcgtctgtggcaggacggg
ccgcgcgaccgcccgctcgtgctcgtggcatccgtgcgggcggcgctgcagcctctcgct
cccggtctcgacgagctcgagccgatcgtgctcacgcagggcgggcgcggctacgagctc
aactccctcgcgacgcgcctcgccgagctcgcctacgcgcgcgtcgacctcgtgacgcgc
cgcggcgagttcgcggtgcgcggcggcatcctcgacgtcttcccgccggatgccgagcac
cccgtgcgcgcggacttcttcggcgacgagctcgagcagctgcgcggcttctcggtcgcc
gaccagcgctcgctcccgggcgacctcggccccgtcgagctcggccccgcgcgcgagctg
ctcatcacggatgccgtgcgcggccgggccgcggagctgcagcacgagtacgaggcgatc
ggccagatgctcgcgaagatcgccgacggcatcccggtcgagggcatggagtcgctcacg
cccgcgctcgtcggtcggctcgtgccgatcaccgactacctgcccgaggatgcggcggtc
gtcgtgctctcgcccgagcgcgtcgcgacgcgcgccctgagcctctccgagacgaaccgc
gagttcctcgaggccgcgtggagcgccgcgacggcgggcggcgccgcgcccatcgacctg
caggcgagcctcgacacgggcgacttcctcacggtgtcggccctgcgcgccgaggcgcgc
ccgcgcacatggtggacggtgagcccgttcgacaccgacgacgacgaggtcacgcgcctc
gacggtcgcgccatcccgagcttcgcgggcagtgccgagggcgccatcggccacgtcgca
gcgctcctcaagggcgagtggtcggtcgcggtcgccgccgccggcgcgggtctcgtcgac
cgcgcggcccaggtgctcgccgagcgggagatcgctgcacgcgtcgtcgacgccgtgccc
tcggagcccgagcccggcgtcgcgtacctcgtcacggcatccgtcgaggcgggtttcgaa
caggacgacgcgcgcttcgcgctgctctcggaggccgagttctacggtcgcgcggcgggc
atcgactcgcgccagcccaagaggctcgcgagccgccgccgcaacgtcgtcgacccgctg
cagctcaagcccggcgacgccgtcgtgcacgagacgcacggcatcggccgcttcgtcgag
ctcgtcacgcgcgaggtcgcgggcggcggacgcgtctcgcgcggccccctcggcacgcag
cacgagaaggtcacgcgcgagtacctcgtgctcgagtacgcgccgtcgaagcgcggccag
ccgggcgaccggctctacgtgcccaccgaccagctcgaccagctgagccgctacgtcggc
ggcgagaatcccgcgctctccaagatgggcggatcggactgggcggccgcgaagggcaag
gcgcgcaaggcggtgcgcgacatcgcggtcgagctcgtcaagctctacagcgcccgcatg
gcgagccccggctacgcgttcagccccgacaccccgtggcagcgcgagctcgaggaggcg
ttccccttcgccgagacgcccgaccagctgcagaccatcgacgaggtcaaggccgacatg
gagcggcccatccccatggaccgcctcgtctcgggcgacgtcggctacggcaagaccgag
atcgccgtgcgcgccgccttcaaggccgtgcaggacggcaagcaggtcgccgtgctcgtg
ccgacgacgctgctcgtcaagcagcacctcgagaccttccaggagcgcttcgccgggttc
cccgtgcacctgcgcgccctcagccggttccagaccgagaaggagtcgaaggagacgatc
gaggggctcgagcgcggcgaggtcgacgtcgtcatcggaacccaccgcatcctctccgag
gccgtgcgcttcaaagacctcgggctcgtcatcatcgacgaggagcagcgcttcggcgtc
gagcacaaggacgcgctcaagaagatgaagaccaacgtcgacatcctcgcgatgagcgcg
acccccatcccgcgcacgctcgagatggcggtcacgggcatccgcgagatgtcgaccctc
gcgaccccgcccgaggaccggcatccgatcctcacctacgtcgggccgcgcagcgacaag
cagatcacggccgcgatccgccgcgagctgctgcgcgagggccaggtgttcttcgtgcac
aaccgcgtctcgtcgatcaaccgcgtcgcggccgagctcgccgagctcgtgcccgaggcg
cgcatcgccgtcgcgcacggcaagctcaccgagcaccagctcgagcaggtgatcgtcgac
ttctgggagcgacgcttcgacgtgctcgtgacgacgacgatcatcgagaccggcatcgac
atcgcgaacgcgaacacgctcatcatcgaccaggccgacaagtacggactcagccagttg
catcagatccgcggccgcgtcggccgtggccgcgagcgcgcctacgcgtacttcctctac
gaccccgagaagccgctcaccgagacggcgcaggaccgcctcgagacgatcgcgaccaac
aacgagctcggcggcggcatgcagatcgccctcaaggacctcgagatccgcggtgccggc
aacctgctcggcggcgagcagtcggggcacatcgcgggcgtcggcttcgacctctacctg
cgcatgatcggcgaggccgtgtcggcgttccgcggcgacgtcgcggaggggcagacggag
ctgcggctcgagctgcccgtggacgcgcgcatccccgaggagtacatcgagtcggagcgc
ctgcggctcgaggcctaccagaagctctcgacggcatccgccccgctctcgcccgacgac
accctcgaccgcgtcgtggaggagctcaccgaccgctacggcacgccgcccgagcccgtg
cagcagctcgtcgccgtctcgcggctgcggcggcaggcgcagaaggcgggcctcggcgag
gtcgtcgcgatgggcgggcggatgcgcctcgcaccgctcgacccgcccgactcgatccag
gtgcggctcacgcgcatgtacccgggcgtcaagttcttcgcggcgcagcacgccgtcaac
gtgcccatgcccgaaggcgcctcggatgcggagctcatcgagtgggtcggccagctgctg
accgcggcgaccggttcggcggcgcaacactga
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integrated database retrieval system
