Phodopus roborovskii (desert hamster): 127215058
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Entry
127215058 CDS
T08852
Symbol
Hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03015
mRNA surveillance pathway
prob05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127215058 (Hbs1l)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
127215058 (Hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127215058 (Hbs1l)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127215058 (Hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
AAA_29
Motif
Other DBs
NCBI-GeneID:
127215058
NCBI-ProteinID:
XP_051031330
LinkDB
All DBs
Position
Unknown
AA seq
682 aa
AA seq
DB search
MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDNPVEEYGYEDLKDS
SNSFLNQQLSEIDQARLCSCLDHMREVLGDAVPDDILTEAVLRNKFDVQKALSVVLEQDN
VQNWKGESGRAVSAGKASKGKSVGSRSSQSESEIVPKVAKMTVSGKKQTMGFEVPSLTSE
ENGDSLHTPHKGPPGDDGSIASPNVLETSTHKSALLPPSIQASEELSSNPAPVKKSGKLR
QQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKA
GKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEIT
GKLGHFLKQAGFKESDVAFIPTSGLSGENLITRSQSSELTMWYKGSCLLEQIDSFKPPQR
AIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVD
WAAAGDHVSLTLVGMDIIKINVGCIFCGPKEPIKACTRFRARILIFNIEVPITKGFPVLL
HYQTISEPATIKRLISVLNKSTGEVTKKKPKLLSKGQNALVELQTQRPVALELYKDFKEL
GRFMLRYGGSTIAAGVVTEIKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggctcggcaccggaacgtccgaggctataactacgatgaagattttgaagacgatgat
ttgtatggccagtctgtggaggacgattattgtatttcaccgtcaacagctgctcagttt
atttactcacgacgtgacaaccctgtagaagaatatggttatgaagatctgaaagactct
tctaattcttttctgaatcaacagttaagtgaaattgaccaagctcgactttgttcatgc
cttgatcacatgagagaggtcctgggagatgctgtgcctgatgacatactgactgaagca
gttctcagaaacaagtttgatgtccagaaggctctgtcagtggttctggagcaagataat
gtgcagaattggaagggggagagcggacgagcggtgtctgcaggaaaggcatcaaaagga
aaatcagttggatctcggtcatctcagagtgagtctgaaattgtgccaaaagttgctaaa
atgactgtatctgggaagaagcaaactatgggatttgaagtgcctagcttaacctctgag
gagaatggagatagtctgcatactcctcacaaaggacctcctggtgacgatggcagcatt
gcttctcctaatgttcttgagaccagcactcataaatctgcccttctacctccctccatt
caagcatcagaagagctgagttcaaatccagcaccagtgaaaaagtctggcaagctgagg
cagcagatagacgtgaaggctgagctggagaagcgtcagggcgggaagcagctgctcaac
ttagtggtcattggtcatgttgatgctgggaaaagtactctgatgggccatatgctttat
cttctgggtaatgtaaacaaaagaactatgcataagtatgaacaagaatctaaaaaggct
ggcaaggcttcatttgcatatgcatgggtcttggatgagactggagaagaaagggaaagg
ggagtaacaatggatgttggcatgacgaagtttgaaaccacaaccaaagttattacatta
atggatgctccgggccataaggatttcattcccaacatgatcactggagcagctcaggct
gatgtagctgttttagttgtggatgccagcagaggagagtttgaagctggatttgagact
ggaggacagacccgagagcatggcctgttagtccgatctcttggagtgacacagcttgct
gtagctgtcaataaaatggatcaggtaaattggcaacaagaaagatttcaagagattact
ggaaaacttggccactttcttaagcaagcaggttttaaggagagtgacgtagcttttatc
cctacgagtggtctcagtggtgaaaatttaatcacaagatcacagtcgagtgagctcacc
atgtggtataaaggatcctgtttattagaacaaattgattccttcaagccccctcaacga
gccattgacaaaccttttaggttatgtgtgtcagatgtcttcaaagatcaaggatctggc
ttttgtgtgactggtaaaattgaagctggttatatccaaactggagaccgactgttagca
atgccacccaatgaaacttgtactgcaaaaggaatcactctgcatgatgaacctgttgat
tgggcagcagcgggtgatcacgttagtcttactttggttgggatggatatcatcaaaatc
aatgttggttgtatattttgtggccccaaagaacctattaaggcttgcactcgcttcaga
gcccggatcctcatcttcaatattgaagttcctatcactaaaggatttcctgtgctgtta
cactaccaaaccatcagtgagcctgctactattaagcgattgattagtgtcttaaacaaa
agtactggtgaagtcacaaagaaaaagcccaagctgctgagcaagggccagaacgcattg
gtagagctgcagacacagagaccagtggccctggagctctacaaagacttcaaggagctg
gggaggtttatgctgcggtatggtggctccacaatagctgctggtgttgtcactgagata
aaagagtga
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