Phodopus roborovskii (desert hamster): 127215300
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Entry
127215300 CDS
T08852
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127215300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prob03021
]
127215300
03019 Messenger RNA biogenesis [BR:
prob03019
]
127215300
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127215300
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
127215300
U7-dependent histone pre-mRNA processing factors
127215300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
127215300
NCBI-ProteinID:
XP_051031628
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEEL
EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEVMLQDIFGEDCVSVKDDSVLSVTVDGKTANINLETRVVECEEGSE
EDESLREMVELAAQRLYAALTPVH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgatccctgcagaggagagcgaccagctgctgatccgacccctgggtgctggg
caggaagtgggaagatcatgcattattctggagttcaaaggaagaaaaatcatgctggac
tgtgggatccaccctggcctggaaggaatggatgctcttccttacattgatctgatcgac
ccagctgagatcgaccttctgttaatcagtcatttccatctggatcattgtggggctctg
ccctggttcctccagaagacaagcttcaaaggacggacgtttatgacgcatgccacaaag
gctatttacagatggctcctctcagactatgtcaaagtcagcaacatatcggcagatgac
atgctgtacactgagacagacttggaagaaagcatggacaaaatcgaaaccattaacttc
catgaagtgaaggaggtggcaggaatcaagttctggtgctaccatgctggccacgtcctg
ggagccgccatgtttatgattgagattgcaggtgtgaagctgttatatacaggtgatttc
tcaagacaagaagacagacacctaatggctgccgaaatccctaatattaagccagacatc
cttattattgaatctacgtacggaacccacatccatgagaagcgtgaagagcgagaagca
aggttctgcaacactgtacacgacattgtcaacagagggggcaggggcctcattcctgtc
tttgctctcggaagagctcaggagctgctgctgattctagatgagtactggcagaaccac
cctgaactacatgacattcccatttactatgcatcgtccctggccaagaagtgcatggca
gtgtaccagacctatgtgaacgccatgaatgacaagatccgaaagcagatcaacatcaac
aaccctttcgttttcaagcacatcagcaacctcaagagtatggatcactttgacgacatc
ggccccagtgttgtaatggcctctccaggcatgatccaaaatggcttatccagagagctg
tttgaaagctggtgtacagataagaggaacggcgtcatcatcgcagggtattgtgtagaa
gggacacttgccaagcacatcatgtctgaacctgaagaaatcaccaccatgtctggacag
aagttgccactgaaaatgtctgttgattacatttctttctctgctcacacagattaccag
caaaccagtgaatttattcgtgctctgaagccgcctcacgtgattttagtccatggggaa
cagaacgaaatggccaggctgaaagcagctctgatcagagaatacgaggataacgatgaa
gttcacatcgaggttcacaatcctcggaacacagaggccgtgaccctgaacttcaggggg
gagaagctcgccaaggtcatgggctttttggcagacaagaaaccagaacagggccagcgg
gtttctggaattcttgttaaaagaaactttaattaccacatactttctccctgtgacctc
tccaattacactgacctggccatgagcactgtgaaacaaacccaggccatcccatacact
gggccctttaatttgctgtattaccagctacagaaattgacaggtgatgtagaagaatta
gagattcaagaaaaacctgctctgaaggtgttcaagaatatcactgtcatacaggagcca
ggcatggtggttctagagtggctggcgaacccctcaaatgacatgtatgcggacacagtg
accaccgtgatactggaagttcagtcgaatccaaaaataaggaaaggtgcggtgcagaag
gtctctaagaagttagagatgcatgtttacagcaagaggctggaggtcatgctgcaggac
atatttggagaagactgtgtcagtgtgaaagatgactctgtcctcagtgtcacggtggat
gggaaaacagcgaatattaatttggagactcgggtcgtagagtgtgaagaaggaagtgaa
gaggatgagtccctcagagagatggtggagctggctgcccagaggctgtacgccgccctg
acccctgtgcactga
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