Phodopus roborovskii (desert hamster): 127215627
Help
Entry
127215627 CDS
T08852
Symbol
Smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03082
ATP-dependent chromatin remodeling
prob04714
Thermogenesis
prob05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127215627 (Smarcc2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
127215627 (Smarcc2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
127215627 (Smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prob03021
]
127215627 (Smarcc2)
03036 Chromosome and associated proteins [BR:
prob03036
]
127215627 (Smarcc2)
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127215627 (Smarcc2)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127215627 (Smarcc2)
PBAF complex
127215627 (Smarcc2)
GBAF(ncBAF) complex
127215627 (Smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
127215627
NCBI-ProteinID:
XP_051032007
LinkDB
All DBs
Position
Unknown
AA seq
1245 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIVKRHQGTVTEDKSNASHVVHP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDDKSPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDENMETTGKDEDDSSTGNKGEQTKSPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQVDAETKAGRKGKELDDLAPETAKGKPELQSSASQQMLNFPDKGKEKP
TDMQNFGLRTDMYTKKNVPSKGKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSRMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTADEPE
RAEESGTEEARGEGLTSDEKKEPKEPREGPGAAEEDAKEEANEAPKKDEEKGKEGDSEKE
SEKSDGDPIVDPEKDKEPKEGQEDVLKDAVESEGERKTKVERDIGEGNLSTAAAAALAAA
AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQQPPPLPPGSQPIPPAGAAGPPTAHGLAVA
PTAVGPAPAGSGVPPGSLGPSEQIGQTGSTVGPQQPPAAGAPLPGAGPPGVPPPGPHGPA
PFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPAAPSIIPFGSLADSISINL
PPPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPANTTMPSSLPLGPGLGSAAAQS
PAIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPAGTVAPVPPPQ
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctctggctcggcaagaactacaagaagtacatacaa
gcagagccaccgaccaacaagtccctgtccagcctggtcgtgcagttgctccagtttcag
gaagaggtttttggcaagcatgtcagcaatgcaccccttactaaactgccgatcaaatgt
ttcctagatttcaaagcaggagggtccctgtgccacattcttgcagctgcctacaaattc
aaaagcgaccagggatggcggcgttacgatttccagaatccatcccgcatggaccgcaat
gtggaaatgttcatgaccatcgagaagtccttggtacagaataattgcctgtctcgacct
aacattttcctgtgcccagagattgagcctaagctgctggggaagttaaaagacatcgtt
aagagacaccagggaaccgtcaccgaggataaaagcaacgcctcccatgttgtgcatcct
gtcccagggaacctagaagaagaggaatgggtgcggccagtcatgaagagggacaaacaa
gttcttctgcactggggctactaccctgacagttatgatacgtggatcccagctagtgaa
attgaagcctctgtggaagatgcgccaactcccgagaagccaaggaaggttcatgccaag
tggatcctcgacacagacactttcaatgaatggatgaacgaggaagactatgaagtcaat
gacgacaaaagccctgtttcccgacggaagaagatttcagctaagacactgacagatgag
gtaaacagcccggattcggaccgacgggacaagaagggaggcaactataagaagaggaag
cgctctccttccccctcaccaaccccagaagctaagaagaagaatgctaagaaaggaccc
tccacaccttacaccaagtcaaagcgaggccacagggaagaggaacaagaagacttgacg
aaagacatggatgagccctctccagtcccaaacgtggaagaggtgacacttcccaaaaca
gtcaacactaagaaggactcggagtcggccccggtcaaaggaggcaccatgactgacctg
gatgaacaggaggatgaaaacatggagacgacgggcaaggacgaggatgacagcagcacg
ggcaacaaaggggagcagaccaagagcccagacctgcacgaggacaacgtgactgaacag
acgcaccacatcatcattcccagctacgccgcctggtttgactacaacagcgttcacgcc
attgaacggagggctctccctgagttcttcaacggcaagaacaagtccaagaccccagag
atctacctggcatatcgaaacttcatgattgatacttaccgactgaatccccaggagtat
ctaacatccactgcctgtcggcggaacttggcaggtgatgtctgcgccatcatgagggtc
catgccttcctggaacagtggggtctcattaactaccaggtagatgccgagagccggcct
accccaatggggccaccccccacctctcacttccacgtcttggcggacacaccatcaggg
ctggtgcctcttcagcccaagaccccacagggccgccaggttgatgctgagaccaaggct
gggcggaagggcaaagagctggatgacctggcgccagagacggctaagggcaagccagag
ctgcagagctctgcttcccagcaaatgctcaactttcctgacaaaggcaaagagaaacca
acagacatgcagaactttggactgcgcacagacatgtacacaaagaagaatgtgccctcc
aagggcaaagctgccgccagtgccactcgggagtggacggagcaggagaccctgctgctc
cttgaggctctggaaatgtacaaggatgactggaacaaagtgtctgaacatgtgggaagc
cgcacgcaggatgagtgcatcttgcattttcttcgccttcccattgaagacccatacctg
gaggactcggaggcctccctaggccctctggcctaccagcccatccccttcagtcagtcg
ggaaaccctgttatgagcaccgttgccttcctggcttctgtcgtcgatccccgagttgcc
tctgctgctgcaaagtcagccctagaagagttctccagaatgaaggaagaggtgcccaca
gccctggtggaagcccacgtgcggaaagtggaagaagcagccaaggtcacaggcaaggca
gaccccgcctttggtctggaaagcagcggcattgcgggaaccactgctgatgagcctgag
cgcgctgaggaaagcggtactgaggaggctcggggagagggcctgacatcagatgagaag
aaggagcctaaggagccacgggaaggaccgggggctgcagaggaagacgcaaaggaggaa
gccaatgaggctcccaagaaggatgaagagaaagggaaagaaggggacagcgagaaggag
tctgagaagagcgatggggacccgatagtcgatcccgagaaagacaaggagccaaaagaa
gggcaggaggacgtcctgaaggacgcggtagagtcagagggggagaggaaaacaaaggtg
gaacgagacattggtgagggcaacctctccacagctgctgccgctgccctggccgccgct
gcagtgaaggccaagcacctggctgctgttgaggagaggaagatcaagtcgttggtggct
ctgctggtggagactcaaatgaagaaactagagatcaaactccgccattttgaggagctg
gagacgataatggaccgggaacgagaagcactggagtatcagaggcagcaactcctggcc
gaccgacaagccttccacatggagcagctcaagtatgcggagatgcgggcccggcagcaa
catttccagcagatgcaccagcagcagcagcagcagccgccacccctgccgccgggctcc
cagcccataccgccagccggggctgctgggccacccacagcccatggtctagctgtggct
cccacagctgtgggtcctgctcctgcaggcagtggggtccctcctggaagcttgggtcct
tctgaacagatcgggcagacaggctcaactgtggggccacagcagccaccagcagctgga
gctcccctgcctggggcaggcccaccaggggtacccccccctggaccccatggccccgca
ccgttccccaaccaacaaactcctccctcaatgatgccaggggcagtgccaggcagcggg
cacccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctcctcct
cctgctgctccatccatcatcccatttggtagcctagctgactccattagtattaacctt
ccccctcctcctaacctgcatgggcatcaccaccacctcccgtttgccccgggcactctc
cccccacctaacctgcctgtgtccatggcgaaccctctacatcctaacctgccggcgaac
accaccatgccatcttccttgcctctcgggccggggctcggatccgccgcagcccagagc
cctgccattgtggcggccgttcagggcaacctcctgcccagtgccagcccactgccagac
ccaggcacccccctgcctccagaccccacagctccaagcccagcaggcacggtcgcccct
gtgcctcctccacagtga
DBGET
integrated database retrieval system
