Phodopus roborovskii (desert hamster): 127216057
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Entry
127216057 CDS
T08852
Symbol
Atxn2
Name
(RefSeq) ataxin-2
KO
K23625
ataxin 2/2L
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob05014
Amyotrophic lateral sclerosis
prob05017
Spinocerebellar ataxia
prob05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127216057 (Atxn2)
05017 Spinocerebellar ataxia
127216057 (Atxn2)
05022 Pathways of neurodegeneration - multiple diseases
127216057 (Atxn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127216057 (Atxn2)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127216057 (Atxn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
DUF6090
Motif
Other DBs
NCBI-GeneID:
127216057
NCBI-ProteinID:
XP_051032548
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All DBs
Position
Unknown
AA seq
1294 aa
AA seq
DB search
MRPSIASAQRPAAGPEPRRRPSGWAARRSLPRTARRGGRGGAATYPSAGPPPRGPGAPPR
GPRSPPCASDCFGSNGNGASRPGSQRLFGVCGPPRPFVVVLLPLAPATAPARACPLGVRA
SPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQPQPQPPAPASGRKPGGGLLSSPGAT
PASAASSSSSAVPAPAAPVVSSSAATGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMV
HILTSVVGSKCEVQVKNGGVYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESIL
FKCSDFVVVQFKDTDSSYARRDAFTDSAVSAKVNGEHKERDLEPWDAGELTASEELEALE
NDVSNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIE
SSAQYKARVALENDDRSEEEKYTAVQRNCSEREGHGTSTRENKYIPPGQRNREVIPWGSG
RQSSPRMGQPGPGSMPSRAASHTSDFNPNSGSDQRIVNGGVPWPSPCPSPSSRPPSRYQS
GPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVSTVPKRMSSEGPPRMSPKAQR
HPRNHRVSAGRGSMSSGLEFVSHNPPSETAAPPVARTSPAGGTWSSVVSGVPRLSPKTHR
PRSPRQNSIGNTPSGPVLASPQAGIIPTEAVSVPVPAASPTPASPAASRALTPSIEAKDS
RLQDQRQNSPATNKENIKASETSPSFSKADNKGMSPVVSEHRKQIDDLKKFKNDFRLQPS
STSESMDQLLSKTREGEKSRDLMKDKIEASAKDAFIDNSSSNCTSGSSKTNSPSISPSVL
SNAEHKRGPEVTSQGVQTSSPACKQEKDDREERKDAAEQIRKSTLNPNAKEFNPRSFSQP
KPSTTPTSPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPM
PVNQAKTYRAVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPSQ
PLVQHVPHYQSQHPHVYSPVIQGNARMMAPPAHAQPGLVSSSATQFGAHEQTHAMYACPK
LPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAPS
PVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTIH
PSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQPI
PVSTTAHFPYMHPSGEACVCRGRRGTPSILLLYR
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccgtcgatcgcttccgctcagcggcccgcggcgggcccggagccgcgccgccgc
ccgtcgggctgggccgcgcggcgctcgctcccgcggacggcgcggcgcggcgggcggggc
ggcgcggcgacgtatccctccgccggccctcccccgcgcggccccggcgcccctccccgc
gggccgcgctcgccgccctgcgcctcagactgttttggtagcaacggcaacggcgcgtcc
cggcccggctcccagcggctgttcggtgtctgcgggcctccccgccccttcgtcgtcgtc
ctgctgcccctggctcccgcgaccgcgccagcccgcgcctgcccgcttggcgtccgcgcg
tccccgccgcgctccggcgtctccttagcgcgcccggctcccggctgtccccgcccggcg
tgcgagccggtgtatgggccgctcaccatgtcgctgaagccgcagccgcagccgcagccg
cccgcgcccgccagtggccgcaagcccggcggcggcctcctctcgtcgcccggcgccacg
ccggcctcggccgcgtcgtcctcgtcttccgcggtgccggccccggccgcgccggtggtg
tcttcctcggcggccacgggcggcgggcgccccggcctgggcagaggtcggaatagtagc
aaaggactgcctcagccaacgatttcttttgatggaatctatgcaaatgtgaggatggtt
catatacttacatcagttgttggatcaaaatgtgaagtacaagtgaaaaatggaggtgta
tatgaaggagtttttaaaacatacagccctaagtgtgatttggtacttgatgctgcgcat
gagaaaagtacagaatccagttcggggccaaaacgtgaagaaataatggagagcattttg
ttcaaatgctcagactttgttgtagtacaatttaaagatacagattccagttacgcacga
agagatgcttttaccgactctgctgtcagtgccaaagtgaatggtgagcacaaggagagg
gacctggagccctgggatgcgggggagctcacagccagtgaggaactggaggctctggag
aatgatgtgtctaatggatgggatcccaatgatatgtttcgatataatgaagagaattac
ggtgtggtgtccacatacgatagcagtttatcttcatatacggttcccttagaaagggat
aactcagaagaatttctaaaacgggaggcaagggcaaaccaattagcagaggaaattgaa
tccagtgctcagtacaaagctcgtgtggcccttgagaatgatgacaggagcgaggaggaa
aagtacacagcggtccagaggaactgcagtgagcgcgaggggcatggcacaagcactagg
gaaaataaatatattcctcctggacaaagaaacagagaagtcataccctggggaagtggg
aggcagagctcaccacggatgggccaacctggaccaggctccatgccatcaagagctgct
tctcacacctcagacttcaacccgaattctggttcagaccaaagaatagttaatggaggt
gttccctggccatcgccttgcccatctccttcctctcgcccaccttctcgctaccagtca
ggtcccaactctcttccacctcgggcagccacccctacacggccgccctccaggcccccc
tcgaggccatccagacccccgtctcacccctctgctcatggttctccagctcctgtctct
actgtgcctaaacgcatgtcttcagaaggtcctccaaggatgtctccaaaggcacagcgg
caccctcggaatcacagagtctctgctgggagaggctccatgtctagcggcctagaattt
gtatcccacaaccccccaagtgaaacagctgctcctccagtggcaaggaccagtcctgca
gggggaacgtggtcctcagtggtcagtggggtcccaaggttatctccaaaaactcacaga
cccaggtctcccaggcagaacagtattggaaacactcccagtgggcctgtgcttgcttct
ccccaagctggcatcatccctactgaagccgtttccgtgcctgttccagctgcatctcct
actcctgccagccctgcagccagcagagctctgaccccatccattgaggctaaagattcc
aggcttcaagatcagaggcagaactctcctgcaacaaataaggaaaatattaaagcaagt
gaaacatcacctagcttttcaaaagctgacaataaaggtatgtcaccagttgtttctgaa
catagaaaacagattgatgatttaaagaagtttaagaatgattttaggttacagccaagt
tctacatctgaatcaatggatcaacttctaagcaaaactagagagggagaaaagtcacga
gatttgatgaaagacaaaattgaagcaagtgctaaggatgctttcattgacaacagcagc
agcaactgtaccagtggcagcagcaagaccaatagccccagcatctccccttctgtgcta
agtaatgcagagcacaagagggggcctgaggtcacatcccaaggggtgcagacttccagt
cccgcctgcaaacaagagaaggatgatcgagaagagagaaaagacgcagctgagcaaatt
aggaagtcaacattgaatcccaatgcaaaggagttcaaccctcgttccttttctcagcca
aagccttctactaccccgacgtcacctcggccgcaagcacaaccaagcccatcaatggtg
ggtcatcagcagccagctccagtgtatactcagcctgtttgttttgcaccaaatatgatg
tatccagtcccagtgagcccaggcgtgcaacctttatatccgattcctatgacgcccatg
ccagtgaaccaagccaagacatatagagcagtaccaaatatgccccagcagcgacaagac
cagcatcatcaaagcaccatgatgcaccctgcctcagcagcaggcccgcccattgtagcc
accccgcccgcttactccactcagtacgttgcatatagccctcagcagtttcccagtcag
cctctagttcagcatgtgccgcattatcagtctcagcatcctcatgtgtacagccctgtc
atacagggtaatgccagaatgatggcaccaccagcacatgcacagcctggtttagtatct
tcctcggcaactcagttcggggcccatgagcagacgcatgcgatgtatgcatgtcccaaa
ttaccatacaacaaggagacaagcccttctttctactttgccatttccacgggctccctt
gctcagcagtatgcacatcctaatgctaccctgcatccacatacaccccatcctcagcct
tcggctactcccactggacagcaacaaagccagcatggtggaagtcatcctgcacccagc
cctgttcagcaccatcagcaccaggccgcccaagctcttcatctggccagtccacagcag
cagtcagccatttaccacgcggggctggcaccaaccccaccttccatgacacctgcctct
aatacacagtctccacagagcagtttcccagcagcacaacagactgtcttcaccatccat
ccttctcatgttcagccggcatataccacccctccccacatggcccacgtacctcaggct
catgtacagtcaggaatggttccttctcatccaactgcccatgcgccaatgatgctaatg
acgacacagccacccggcggtccccaggccgccctcgctcaaagtgcactacagcccatt
ccagtctcgacaacagcgcatttcccctatatgcacccttcaggtgaggcgtgtgtgtgc
aggggccgccggggcaccccgagcattctgctcctatacaggtag
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