Phodopus roborovskii (desert hamster): 127216320
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Entry
127216320 CDS
T08852
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 2-like
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127216320
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
prob04091
]
127216320
Lectins [BR:
prob04091
]
C-Type lectins
Lecticans
127216320
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
127216320
NCBI-ProteinID:
XP_051032884
LinkDB
All DBs
Position
Unknown
AA seq
1992 aa
AA seq
DB search
MATRARRTAKSSGFQTIPTQSSRLLLLFLSLVSRVSTQPAVPGEAFLFPGLSGTSSVPAE
EAIVVANRGLRVPFGREVWLDPVRDLVLQVQPGDRCSVTVLDNDALAQRPGRLSPERFAC
DYGPGEVRYLHLGARSPSRDRVRLQLRYDAPGGAIVLPLALEVEVVFTQLEVVTRNLPLV
VEELLGTSNALDSRSLEFAYQSETEECRVGILSGLSALPRYGELLHYPQVPGXGTSETLL
MDCKAFLELGVRYRHTAPSRSPNRDWLPMVVELHXRGAPMGSPPLKREHFQVLVRIRGGA
ENTAPKPSFVAMMMMEVDQFVLTALTPDMLAAEDAESNPDLLIFNLTSAFQPGQGYLVST
DDRSLPLSSFTQRDLRLLKIAYQPPSEDSNEERLFELELEVVDPEGAASDPFAFMVVVKP
MNTLAPVVTRNTGLILYEGQYRPLTGPVGSGPQNLVISDEDDLEAVRLEVVAGLRHGHLV
VLGSPSSDSAPKTFTVAELAAGQVVYQHDDRDGSLSDNLVLRMSDGEGRHQVQFLFPITL
VPLDDQPPVLNANTGLTMAEGETVPVPPTTLSATDMDSDDSQLRFVLESPFSTTGYLLLR
QTHAPQEEQGLWQKRGLFYERRVTEWRQQDITEGRLFYRHSGPHSPGPVMDQLTFRVQDN
HDPPNQSGIQKFVIRIHPVDRLPPELGRGCPLRMVVQESQLTPLRKKWLHYTDVDTDDRE
LHYTVTQPPMDTDENHAPAPLGTLVFTDNPSIIVTHFTQAQVNHHKIAYRPPNQELGVAA
RVAQFQFQVEDRAGNVAPGTFTLYLQPVDNQPPEIVNTGFTIEEKGHHILQETELHVNDV
DTDVAHISFTLTQAPKHGHMQISGQTLHVGGHFRLEDIQHGRVSYSNSGDESLTDSCSLE
VSDRHHVVPITLRVNIKPVDREGPRSILPAGTLESYLDVLENGATEVTANIIKGTYQDTD
DLMLTFLLENPPLYGEILVNGAPAEHFTQRDILEGSVVYVHTSGEIGLLPKADSFNLSLS
DMSQEWRIGSSIIQGVTVWVTILPVDSQAPEISVGEQFVVLEGDKSMITLTHLSAEDTDS
LNDDLLCTIVIQPTSGYVENISPAPGSEKSRAGIAISAFTVKDLRQGHINYVQSVHRGVE
PVEDRFIFRCSDGINFSERQIFPIVIIPTNDEQPEMFMREFMVMEGMSLVVDTPILNAAD
ADIPXDDLTFTITRFPTHGHIMNQLINGTVLVESFTLDQIIESSSIIYEHDDSETQEDSF
VIKLTDGKHSVEKMALIVVIPVDDETPRMTINNGLEIEVGETKVINNKILMATDLDSDDK
SLVYIIRYGPGHGLLQRQKPTGVFENITLGMNFTQDEVDRNLIQYVHFGQEGIRDLIKFD
VTDGTNALIDRYFYVSIGSVDIVFPDVISKGVSLREGGKVTLTTDLLSTSDLNSPDENLV
FTITRAPMRGHLECTDQRGVSITSFTQLQLAGNKIYYIHTAEDEVKMDSFEFQVTDGRNP
VFRTFRISISDVDNKKPVVTIHNLVVSESESKLITPFELTVEDRDTPDRLLKFTVTQVPV
HGHLLFNNTRSVMVFTKQDLNENLISYKHDGTESTEDSFSFTVTDGTHSDFYVFPDTVFE
TRRPQVMKIQVLAVDNSVPQIVVNKGASTLRTLATGHLGFMITSKVLKVEDRDSLHFSLR
FIVTEAPQHGYLLNLGQGNHSITQFTQADIDDLKICYVLRERANATSDMFHFIVEDDGGN
KLTNQHFRLNWAWISFEKEYYLINEDSKFLDIVLKRRGYLGETSFISISTRDGTAQRDSD
FKGKAQRQVQFNPGQTRALWRVRILGDEVHEHSETFQVVLSEPVLAALEFPTVTTVEIID
PGDESTVFIPQSEYSVEEDVGELFIPIRRSGDVSQELMVICYTQQGTATSTVRTSVLSYS
DYISRPEDHSSVVRLDKDEREKMCRVVVIDDSLYEEEETFQVLLSMPMGGRIGDKFPGAK
VTILTDKDDGEF
NT seq
5979 nt
NT seq
+upstream
nt +downstream
nt
atggccacccgagcgcgcaggacagccaagtcctccggcttccagacgatacccacacag
tcgtccaggctgctgctgctgttcctgtcactggtaagccgcgtctccacacagcccgct
gtcccaggagaagcatttttgttcccgggtctttccgggacttccagtgtccctgcagag
gaagctatagtggtggcgaaccgcgggctccgggtgcccttcggtcgcgaagtctggctg
gatccagtgcgtgacttggtgctgcaggtgcagccaggggatcgctgctcagtgactgtg
ctagataatgacgcgctggcccagcggcctggccgcttgagtcccgagcgcttcgcgtgc
gactatggcccgggagaggtgcgctacttgcacctgggtgctcgcagcccttcgcgcgac
cgcgtccggctgcagctgcgctatgatgccccaggaggggcgatagtcctgcctttggcc
ttagaggtggaagtggtattcactcagctggaagttgtgactcggaacttacctctggtc
gtggaagaactactagggaccagcaatgccctggactctcggagcttagagtttgcctac
cagtctgagactgaggagtgccgcgtgggcatcttgtcaggtttgagtgctttgcctcgt
tatggagagctccttcactacccacaggtcccaggannggggacctcggagacccttttg
atggactgcaaagcattcctggagctgggagtgcgctatcgtcacacagctcccagtcgc
tcacctaacagggactggctacctatggtggtagagctacacntccgaggggctcctatg
ggtagcccgcctttaaaacgtgagcacttccaggtgcttgtgaggatccgcggaggagca
gagaacactgcaccgaagcccagtttcgtggccatgatgatgatggaggtggaccagttt
gtactgaccgctctaacaccagacatgctggcagcagaggatgctgaatccaacccggac
cttttgatcttcaacctcacctctgccttccagcctgggcagggctacttggtgagcact
gatgaccgaagcctgcctctctcctcctttacacaacgggatttgcgcttgctgaagatt
gcctaccagcctccctctgaagactctaacgaggagcgtctgtttgaactggaactggag
gtagtggaccccgaaggagcagcctcagacccttttgccttcatggttgtggtgaagccc
atgaatacgttggccccagtggtcacacgaaacactggccttattctctatgaaggtcaa
tatcggccactcacgggtcctgtaggcagtggaccccagaacttggtcatcagtgatgaa
gacgatctcgaagctgtgagactagaggtggtagccgggctccggcatggccaccttgtt
gttctagggtctcccagtagtgactctgctcccaagaccttcacagtggctgagctggcc
gctggccaggttgtctaccagcatgatgacagagatggctcactgagtgacaacctggtg
ctgcgcatgtcagatggagaaggcaggcaccaggtccagttcctgttccccatcacttta
gtgcctttggatgaccagccacctgtcctgaacgccaacactgggctgaccatggcagag
ggcgaaactgtgcctgtcccacccacgactctgagtgcaactgatatggattcagatgac
tctcagttgcgatttgtactagaatcacctttctcaaccacagggtacctacttctccgc
caaactcatgctccccaggaagagcaggggctgtggcagaaacgcgggctgttttatgag
cgaagagtgacagaatggcggcaacaggatatcacagaaggaaggctcttctacaggcac
tcagggccccatagtcctgggcccgtgatggaccaattgacatttagagtccaagacaac
catgacccccctaaccaatctgggatccaaaagtttgtgatacgcattcatcctgtggac
cgccttcctccagaactgggccgtggctgtccccttaggatggtggtacaggaatcccag
ctcacaccactgagaaaaaagtggctgcactacactgatgtggacacagatgatagagag
ctacactacacagtgacccagccccccatggacacagatgaaaaccatgcacctgctcca
ctaggcactttggtcttcactgataatccctcaatcatagtgacccattttacccaagcc
caggttaaccatcataaaattgcttacaggccccccaatcaagagctaggagtagcagct
cgagtggcacagtttcaattccaagtagaggatcgagctgggaatgttgctccgggcacc
ttcactctttacctgcagcctgtggataaccagcctcctgagattgtcaatactggcttc
actattgaggagaagggccaccacatcctgcaggagactgagctgcacgtgaatgatgtt
gacaccgatgtggcccacatctctttcactctcacacaggctcccaagcatggccacatg
caaatctctggccagacattacatgtcggaggacacttccgtttagaggacatacagcat
ggcagagtctcctattcaaatagcggggatgaatctttgactgacagctgctccctggag
gtcagtgatagacaccatgtggtgcccatcactctcagagtgaatattaagccagtagac
cgtgaaggtcccaggtcaatccttccagctggcactctggagtcctatctagatgtcttg
gaaaatggggctactgaagtcactgccaatatcattaaggggacctatcaagatactgat
gatttaatgttgactttcctattggaaaatccacctttatatggggaaattctggtcaat
ggagctccagctgagcatttcactcagagggacatcctggagggttctgttgtctatgtc
cacaccagtggtgagattggcctgttgcctaaagcagactcttttaacctgagcctgtca
gatatgtctcaagaatggagaattggcagcagtattattcaaggtgttactgtgtgggtg
accattctacctgtggacagccaagccccagaaatttctgttggggagcagtttgtagtg
ctagaaggtgacaagagtatgataaccctaacccatctaagtgctgaggacacagactca
ctgaacgatgacctcttgtgcacaatagtcattcagccaacctcaggctatgtggagaac
atttctccagcaccaggctcagagaagtcaagagctgggattgccattagtgccttcact
gtgaaggatctcaggcaaggacacattaattatgttcagagtgtccacaggggggttgag
cctgtggaagaccgttttatattccgttgttctgatggcattaacttttctgagagacag
attttccccattgtaatcattcctaccaatgatgaacagccagaaatgttcatgagggaa
ttcatggtgatggaaggcatgagtctggtggttgacacacccatcctcaatgctgcagat
gctgacattcccngggatgatttaactttcaccattacccggtttccaactcatggtcac
atcatgaaccagctgatcaatggtacagtgttggtcgaaagcttcaccctggaccagatt
atagagagttccagcattatttatgagcatgatgactctgagactcaagaagacagtttt
gtgattaaattgacagacggcaagcactctgtggagaaaatggccctcattgtggtcatc
cctgtggatgacgagacccccaggatgaccatcaataatgggctagaaatagaagttggg
gaaaccaaagttatcaacaacaaaatactaatggcaactgatttagactctgatgacaaa
tcattggtttatattattcgttatggaccaggacatggcttgttacagaggcaaaaacct
acaggtgtctttgaaaacatcaccctaggcatgaattttacccaggatgaagtggacaga
aatttaattcagtatgtccattttgggcaagagggcattcgagacctaattaaatttgat
gtgacagatggaacgaatgcccttatcgatcgatacttttatgtgtctattggaagtgtt
gatattgtcttccctgatgtgataagtaagggtgtgtccttgagagaaggtggcaaagtc
actcttacaacagacctactgagtacaagtgacttgaatagtcctgatgagaacttagtt
ttcactattaccagggctcctatgagaggtcacttggagtgcacagatcaaagaggagtg
tccatcacttctttcactcagctccaattggctggtaacaagatctactacatccataca
gctgaggatgaggtaaaaatggacagttttgagtttcaagtcacagatggacggaaccct
gtcttccgaacattccggatctccatcagtgatgtagacaacaaaaagccagtggtcacc
atccacaacttggtggtcagcgaaagtgagagcaagctgatcactccctttgagctcact
gtggaagacagagatactcctgacaggctcctcaaattcactgtcacccaggtccccgtt
cacgggcacctcctattcaacaacactagatccgtcatggtttttaccaagcaagacttg
aatgaaaacttaatcagctacaaacatgatggcacagagtccacggaagacagtttctcc
ttcacggtgactgatggcacccactctgacttctatgtttttcctgatacagtatttgaa
actaggagacctcaagtcatgaaaatccaagtgctggctgttgacaacagtgttccccaa
attgtggtgaacaaaggagcttctacacttcgtactctggccactggacatttggggttc
atgatcacaagcaaagtactgaaagtggaggacagagacagcctacatttttctctcagg
ttcattgtgacagaagctccccaacatggctaccttctaaacctgggccaaggtaaccac
agcatcacacagtttacacaagctgacattgatgacctgaaaatatgctatgtcttaaga
gagagagctaatgccacaagtgatatgttccatttcatagtggaagatgatggtgggaac
aagttaaccaaccagcattttcgactgaattgggcatggatctccttcgaaaaggagtat
tacttgatcaacgaagattccaaatttcttgatattgttcttaaacgcagaggatacctg
ggagaaacttcatttataagcatcagcacgagggatgggactgcacaaagagacagcgac
ttcaagggcaaggcccagcgacaagtgcagttcaaccctggccagaccagggccttgtgg
agagtgcggatcttgggcgatgaggtgcatgagcactcagagaccttccaggtggttctc
tctgagcctgtgctggcagccctggagttccccacagtgaccactgtggagatcattgac
ccaggcgacgaatctaccgtgttcattccccagtcggaatactctgttgaagaagatgtg
ggcgagctgttcattcccatcaggagaagtggagatgtcagccaggagctgatggtgatc
tgctacacacagcaagggacagcaaccagcactgtgcggacatcagtgctgtcttactcc
gactacatctccaggcctgaggaccacagtagtgtggtccggcttgacaaagatgaacgt
gagaaaatgtgccgtgtggtagtaattgatgactcattatacgaagaggaagagactttc
caggtccttttgagcatgcccatgggcgggaggatcggtgacaagtttccaggagccaag
gtgaccatactgacagacaaggatgacggtgagttttga
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