Phodopus roborovskii (desert hamster): 127216472 Help Entry 127216472         CDS       T08852                                  Symbol Col1a2 Name (RefSeq) collagen alpha-2(I) chain   KO K06236   collagen type I alpha Organism prob  Phodopus roborovskii (desert hamster) Pathway prob04151   PI3K-Akt signaling pathway prob04510   Focal adhesion prob04512   ECM-receptor interaction prob04611   Platelet activation prob04820   Cytoskeleton in muscle cells prob04926   Relaxin signaling pathway prob04933   AGE-RAGE signaling pathway in diabetic complications prob04974   Protein digestion and absorption prob05146   Amoebiasis prob05165   Human papillomavirus infection prob05205   Proteoglycans in cancer prob05415   Diabetic cardiomyopathy Brite KEGG Orthology (KO) [BR:prob00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     127216472 (Col1a2)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     127216472 (Col1a2)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     127216472 (Col1a2)   09142 Cell motility    04820 Cytoskeleton in muscle cells     127216472 (Col1a2)  09150 Organismal Systems   09151 Immune system    04611 Platelet activation     127216472 (Col1a2)   09152 Endocrine system    04926 Relaxin signaling pathway     127216472 (Col1a2)   09154 Digestive system    04974 Protein digestion and absorption     127216472 (Col1a2)  09160 Human Diseases   09161 Cancer: overview    05205 Proteoglycans in cancer     127216472 (Col1a2)   09172 Infectious disease: viral    05165 Human papillomavirus infection     127216472 (Col1a2)   09174 Infectious disease: parasitic    05146 Amoebiasis     127216472 (Col1a2)   09166 Cardiovascular disease    05415 Diabetic cardiomyopathy     127216472 (Col1a2)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     127216472 (Col1a2)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:prob00536]     127216472 (Col1a2) Glycosaminoglycan binding proteins [BR:prob00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    127216472 (Col1a2) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  127216472 NCBI-ProteinID:  XP_051033134 LinkDB All DBs Position Unknown AA seq 1369 aa AA seqDB search MLSFVDTRTLLLLAVTSCLATCQSLQAVTARKGPTGDRGPRGERGPAGPRGRDGADGPNG PPGPPGPPGPPGPPGLAGNFAPQYSDKGVSSGPGPMGLMGPRGPPGAVGAPGPQGFQGPA GEPGEPGQTGPAGSRGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFK GIRGHNGLDGLKGQPGAQGVKGEPGAPGENGTPGQAGARGLPGERGRVGAPGPAGARGSD GSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPSGPAGPRGEVGLPGLSGPVGPP GNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGTRGLVGEPGPAGSKGET GNKGEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPGGPPGLRGSPGSRGLPGADGRAGVM GPPGNRGSSGPAGVRGPNGDPGRPGEPGLMGPRGLPGSPGNVGPSGKEGPVGLPGIDGRP GPIGPAGARGEAGNIGFPGPKGPSGDPGKAGEKGHPGLAGARGAPGPDGNNGAQGPPGPQ GVQGGKGEQGPAGPPGFQGLPGPSGTTGEVGKPGERGLPGEFGLPGPAGPRGERGPPGES GAAGPSGPIGSRGPSGAPGPDGNKGEAGAVGAPGNAGASGPGGLPGERGAAGAPGGKGEK GETGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPSGPAGPRGSPGERGEV GPAGPNGFAGPAGAAGQPGAKGEKGTKGPKGENGVVGPAGPVGAAGPSGPNGPPGPVGGR GDGGPPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGVRGPRGDQGPVGRTGETGAS GPPGFTGEKGPSGEPGTAGPPGSPGPQGFLGPPGILGLPGSRGERGLPGVAGALGEPGPL GIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGAPGRDGQPGHKGERGYPGNIGPT GAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGPAGAVGPRGPSGPQGVRGDKGEAGDKGAR GLPGLKGHNGLQGLPGLAGQHGDQGSPGPVGPAGPRGPAGPSGPAGKDGRSGHPGPVGPA GVRGSQGSQGPSGPPGPPGPPGPPGVSGGGYDFGFEGDFYRADQPRSQPSLRPKDYEVDA TLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWNSDYYWIDPNQGCTMDAIKVYCDF STGETCIQAQPVNVPAKNTYSSAQANKHVWLGETINGGSQFEYNMEGVTSKEMATQLAFM RLLANRASQNITYHCKNSIAYMDEETGRLNKAVVLQGSNDVELVAEGNSRFTYTVLVDGC SKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFAVDVGPVCFK NT seq 4110 nt NT seq  +upstreamnt  +downstreamnt atgctcagctttgtggatacgcggactctgttgctgcttgcagtaacttcgtgcctagca acatgccaatctttacaagcggtgactgcaagaaagggccccactggagatagaggacct cgtggagaaaggggtccagcaggtccccgaggcagagatggtgcagacggtcccaatggc cctcctggtccccctggtccccctggtcctcctggcccccctggtctggctgggaacttt gctccgcagtattctgataaaggagtttcatcaggccctggaccaatgggcttaatggga cccagaggacctcctggtgctgttggagcccctggccctcaaggtttccaaggacccgct ggtgagcctggtgaacctggtcaaacgggtcctgcaggttctcgtggtccagctggccct cctggcaaggctggtgaggatggtcaccctggaaaacctggacgacctggtgagagagga gttgttggaccacagggtgctcgtggtttccctggaactcctggacttcctggcttcaaa ggcattcgtggacacaatggtctggatggattgaagggacagcctggtgcacagggtgtg aagggtgaacctggtgcccctggtgaaaacggaactccaggtcaagctggagcccgtggg cttcctggtgagagaggacgagttggagcccctggtccagctggtgcccgtggcagtgat ggcagtgttggtcccgttggccctgctggtcccattggatctgctggccctccaggcttt ccaggtgctcctggtcccaagggtgaacttgggcctgttggtaatcctgggccttctggt cctgctggtccccgtggtgaagtgggtcttccgggtctttccggccccgttggtcctcct ggcaaccctggagcaaatggccttaccggagctaagggtgctgctggcctccctggtgtt gctggggctcctggtctccctggcccccgaggcattcctggccccgttggtgctgctggt gctactggtaccagagggcttgttggtgaacccggtccagctggctccaaaggagagact ggtaacaagggtgagcctggttctgctggagcccaaggtcctcctggtcccagtggtgaa gaaggaaagagagggtcccctggtgagcctggatctgcaggccccggaggacctccaggg ctaagaggtagccctggctctcgtggtctccctggagctgatggtagagctggtgtaatg ggcccccctggcaatcgtggttcaagcggtcctgctggagtccgaggtcctaatggagat cctggtcgccctggggagcctgggctcatgggtcccagaggtcttcctgggtctcctgga aatgttggcccatctggtaaagaaggacctgtgggccttcctggcattgacggcagacct ggcccaattggcccagctggggcaagaggtgaagctggcaacattggattccctggaccc aaaggcccctctggtgatcctggaaaagctggtgagaaaggtcatcctggtcttgctggt gctcggggtgctccaggtcctgatggaaacaatggtgcccagggacctcctggaccccag ggtgtccaaggtggcaaaggtgaacagggtcctgctggtcctccaggcttccagggtctg cctggtccctcaggtaccactggagaagttggcaagccaggagagaggggtcttcctggt gaatttggtctccctggtcctgctggtccaagaggagaacgtggtcccccaggtgagagt ggagcagctggcccttctggtcccattggaagccgaggtccttctggagccccagggcct gatggaaacaagggcgaagctggtgctgtcggagctccaggaaatgctggcgcctctggt cctggtggtcttccaggagagaggggtgctgctggagcacctggaggcaagggggaaaag ggtgaaactggtctcagaggtgaaattggaaaccctggcagagatggtgctcgtggtgct cctggtgctgtaggtgctcctggtcctgctggagccacaggcgaccggggcgaagctggt gctgctggtccctctggcccagctggtcctcgaggtagccctggtgaacgtggtgaggtt ggtcctgctggccctaatggatttgctggacctgctggtgctgctggtcaacctggtgct aaaggagagaagggaaccaaaggacctaagggtgaaaatggtgtcgtcgggcctgctggg cctgttggagctgctgggccatctggtccgaatggcccacctggtcctgttggaggtcgt ggtgatggagggccccctggtatgactggcttccctggtgctgccggacggactggtccc cccggacctagcggtattactggtcctcctggtccccctggtgctgctggcaaagaaggg gtccgtggtcctcgtggtgaccaaggtccagttggccgaactggagaaacaggtgcatct ggcccccctggatttactggtgaaaagggtccctctggagaacctggtactgcaggacct cctggctccccaggtcctcagggtttcctgggtcctcctggtattctgggtctccctggc tctagaggtgaacgtggtctgccaggtgtcgccggtgctctgggtgaacctggtcctctg ggcatcgcaggccctcctggggcccgtggtccccccggtgctgtgggtagccctggagtt aatggtgcccctggtgaagctggccgtgatggtaaccctggcagcgatggtgccccaggt cgtgatggtcaacctggacacaagggagagcgtggttaccctggcaacattggccctact ggtgctgcaggtgcccctggccctcatggttctgtgggtcctgctgggaaacatgggaac cgtggtgaacctggtcctgctggctctgttggtcccgctggtgctgttggcccaagaggt cctagtggtcctcaaggcgttcgaggtgacaaaggagaagctggcgacaaaggggccaga ggtcttcctggcctcaagggacacaatggattgcagggtcttcctggtcttgctggccaa catggtgaccaaggttctcctggccctgtgggtcctgctggtcccaggggtcctgctggt ccttctggccctgctggcaaagatggtcggtctggacatcctggacctgttgggcctgct ggcgttcgtggctctcagggtagccaaggtccttctggtcctcctggccccccaggtcct cctggccctcctggtgtcagtggaggtggctatgactttggttttgaaggagacttctac agggctgaccagcctcgctcacagccttcactcagacccaaggactatgaagttgatgca actctgaaatctctcaacaaccagattgagactcttctcactcctgagggctctagaaag aaccctgcccgcacatgcagggacttaaggctcagtcacccagaatggaacagcgattac tactggattgaccctaaccaaggatgcactatggatgcaatcaaagtgtactgtgatttc tccactggtgaaacctgcatccaggcccaacctgtaaatgtcccagccaaaaacacatac agcagtgctcaggccaacaagcatgtctggttaggagaaactatcaacggtggcagccag tttgaatacaacatggaaggagtaacttcaaaggaaatggcaactcaactcgccttcatg cgcctgctagccaaccgtgcatctcaaaacatcacctaccactgcaagaacagcattgcc tacatggatgaggagacaggtcgcttgaataaagctgtggttttgcagggatccaacgat gtcgaacttgttgctgaaggcaacagcagattcacctatactgtccttgtagatggctgc tccaaaaagacgaatgaatggggcaagacaatcattgaatacaaaacaaacaaaccatcg cgcctgccattcctggacattgcacctttggacatcggtggcgccgaccaagaattcgcc gtggacgttggcccagtctgtttcaaataa

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