KEGG   Phodopus roborovskii (desert hamster): 127216840
Entry
127216840         CDS       T08852                                 
Symbol
Prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
  KO
K12850  pre-mRNA-splicing factor 38B
Organism
prob  Phodopus roborovskii (desert hamster)
Pathway
prob03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:prob00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127216840 (Prpf38b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:prob03041]
    127216840 (Prpf38b)
Spliceosome [BR:prob03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    127216840 (Prpf38b)
SSDB
Motif
Pfam: PRP38 PRP38_assoc
Other DBs
NCBI-GeneID: 127216840
NCBI-ProteinID: XP_051033657
UniProt: A0AAU9YXZ5
LinkDB
Position
Unknown
AA seq 544 aa
MANNSPALTGNSQPQHQAAAAVAQQQQQCGGGGATKPAVSGKQGNVLPLWGNEKTMNLNP
MILTNILSSPYFKVQLYELKTYHEVVDEIFLKVTHVEPWEKGSRKTAGQTGMCGGVRGVG
TGGIVSTAFCLLYKLFTLKLTRKQVMGLITHIDSPYIRALGFMYIRYTQPPTDLWDWFEP
FLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPRKM
KKDGKEGVEEIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKE
RQRLEREAKEREKERRRSRSIDRGLDRRHSRSRERHRSRSRSRDRKGDRRDRDREREKEN
ERGRRRDRDYDKERGSDRERDRERSRERSKEQRSRGEGEEKKYKEDKEDRRHRDDKKESK
KKHSRSRSRERKHRSRSRSRNAGKRSRSRSKDKSSKHKNESKEKANKRSRSGSQGRTGSA
EKLRKREYSPSKEKSRKRSRSQERSHKRDHGDGKDQSDRQDHQRSQSVEPESQEKEHKNK
DETM
NT seq 1635 nt   +upstreamnt  +downstreamnt
atggctaacaacagccccgcgctgaccggcaactcgcaaccgcagcaccaggcggccgcg
gccgtggcccagcagcagcagcagtgtggcggcggcggcgccaccaagccggcggtatct
ggcaagcagggcaacgtgctgccgctgtggggcaatgagaagaccatgaacctcaacccc
atgatcctcaccaacatcctgtcgtcgccttacttcaaagtgcagctttacgagctcaag
acctaccacgaggtggtggacgagatcttccttaaggtcacacatgttgagccctgggag
aaaggaagcaggaaaactgccggccagacggggatgtgcggaggggttcgaggtgttgga
acaggaggcattgtttctacagctttttgcctgttgtacaaattatttaccctgaagtta
actcgaaagcaagtgatgggtctcataacacatatagactctccatatatcagagcactt
ggatttatgtatataaggtatacacagccccctacagacctgtgggactggtttgagccc
ttccttgatgatgaggaggacctagatgtgaaagctggcggaggctgtgtaatgaccatt
ggagagatgcttcgctcctttctcacaaaattggagtggttttctactttgtttccaaga
attccagttccagttcagaagaatattgatcagcagataaaaactcggcctaggaaaatg
aagaaagatggcaaggaaggagttgaggaaatagacagacatgttgagcgaagacggtcc
aggtctccaaggagatcactgagcccacggaggtctccaagaagatcaagaagtagaagt
catcaccgggaaggacatggatcttctagttttgacagagaattagaaagagagaaagaa
cgacagcgactagagcgggaagccaaagagagagagaaggaaaggcgaagatcccgaagt
atcgatcgggggttagaccgcaggcacagccggagtagggaaaggcacagaagtcgcagt
cgaagtcgtgataggaaaggggatagaagagacagggatcgggaaagagagaaagaaaac
gagagaggtcgaagacgagatagagattatgataaggagagaggtagtgatcgagaaagg
gacagggagagatcaagagagcggtccaaggagcagagaagtagaggtgagggagaggag
aagaagtacaaagaagacaaggaggataggcgacacagagacgacaaaaaagaatccaag
aaaaaacacagcagaagtagaagcagagaaaggaaacacagaagtagaagcagaagcaga
aatgcagggaagcggagcagaagcaggagcaaagacaagtcaagcaaacataaaaacgag
agcaaggagaaggcaaacaaaagaagtaggagtggcagtcaaggaagaaccggcagtgct
gaaaaactgaggaaacgagagtacagccctagcaaagagaagtctagaaagcgcagcaga
agccaagagcgctcccataagagagatcatggggatggcaaggaccagtcagacagacag
gatcatcagaggagccagagtgtagagccagagagccaagaaaaggaacataaaaacaaa
gatgagactatgtga

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