Phodopus roborovskii (desert hamster): 127217140
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Entry
127217140 CDS
T08852
Symbol
Col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04151
PI3K-Akt signaling pathway
prob04382
Cornified envelope formation
prob04510
Focal adhesion
prob04512
ECM-receptor interaction
prob04820
Cytoskeleton in muscle cells
prob04926
Relaxin signaling pathway
prob04933
AGE-RAGE signaling pathway in diabetic complications
prob04974
Protein digestion and absorption
prob05146
Amoebiasis
prob05165
Human papillomavirus infection
prob05200
Pathways in cancer
prob05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
127217140 (Col4a5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127217140 (Col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127217140 (Col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127217140 (Col4a5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
127217140 (Col4a5)
09154 Digestive system
04974 Protein digestion and absorption
127217140 (Col4a5)
09158 Development and regeneration
04382 Cornified envelope formation
127217140 (Col4a5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
127217140 (Col4a5)
09162 Cancer: specific types
05222 Small cell lung cancer
127217140 (Col4a5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
127217140 (Col4a5)
09174 Infectious disease: parasitic
05146 Amoebiasis
127217140 (Col4a5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
127217140 (Col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
prob04147
]
127217140 (Col4a5)
00536 Glycosaminoglycan binding proteins [BR:
prob00536
]
127217140 (Col4a5)
Exosome [BR:
prob04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127217140 (Col4a5)
Glycosaminoglycan binding proteins [BR:
prob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127217140 (Col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127217140
NCBI-ProteinID:
XP_051033964
LinkDB
All DBs
Position
Unknown
AA seq
1685 aa
AA seq
DB search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NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtgcgggaagtgtgcctggccgccggctggttcttactggccctgtttctgtgg
gggcagcccgcagaggctgcggcctgccatgggtgttctcttggatcaaaatgtgactgc
agtggtataaaaggggaaaagggagaacgaggatttccaggtttggaaggccatccaggt
ttgccaggatttccaggtccagaagggcctccaggacctcggggacaaaagggcgatgat
ggaactccagggccaccaggaccaaaaggaatcagaggtcctcctggacttcctggattt
ccagggacaccaggtcttcctggaatgccaggccatgatggagctccaggacctcaaggt
atacctggatgcaatggaaccaagggagaacgtggatttccaggcaatcctgggtttcct
ggtttacaaggtcctccagggcctcctgggatcccagggatgaagggggaaccaggtagt
ataatcatgtcatcattgccaggaccaaagggtaatcaaggatacccaggtcctcctgga
atacaaggtccacctggtcccaagggtacatcaggaccaagtggtcctccaggaccacca
ggtttaatgggccctcctggtccaccaggcccaccaggaccaaaggggaatatgggctta
aacttccagggacccaaaggtgaaaaaggtgaacaaggtcttcagggcccacctggtcca
cctggacagatcagtgaacagaaaagaccaactgatctagaatttcagaaaggagatcag
ggagttcctggtgacagagggcctcctggacctccaggaatacctggtcctccaggtcct
ccaggtggtgtgaaaggtgaaaagggtgagccaggagaaccaggcaaaaggggtaaacca
ggcaaagatggagagagtggccaaccaggactcccaggtttgcctggtgatcctggttac
cctggtgagccaggaagggatggtgaaaagggccaaaagggtgatattggcccacctgga
cctcctggactagtaattcctacttctgggactggtgtgactgtgggagaaaaaggaaat
attgggctacctggtttgcctggagaaaaaggagaaagaggatttcctggaatacaaggt
ccacctggatttcctggacctccagggacagcgcttatgggtcctcctggtccccctgga
tatcctggagaaaggggtcagaaaggtgatgacggtccccctggaatttgtattcctgga
tctcctggacttgatggacagcctggggctcccggccttccagggcctcctggtcctccc
ggccctcatttgcctcccagtgatgagatatgtaaagcaggccctccgggacccccagga
tctccaggtgataaaggactccaaggagcaccaggagtaaaaggtgacaaaggtgataca
tgcttcaactgtattggaactggaatttcagggcctccaggacaacctggtttgccaggt
ctcccaggtcctccaggatctcttggattccctggacagaagggtgaaaaaggaaatgct
ggcacgattggtccaaaaggattaccaggcatacctggacctccaggtgctccaggattt
ccaggatctaaaggtgaccctggtgatgtcctcactcttctgggaatgaaaggcgacaaa
ggagagttgggttcccctggagctccagggcttcctggtctacctggtactcctggaaag
gacggattgccaggactccctggcctgaaaggagagcctggtggaattgcttttaagggt
gaaagaggtcctcctgggaacccaggtttgccaggtgtcccaggaaatatgggacctatg
ggccctgttggttttgggcccccaggccctataggtgaaaaaggaatacaaggtgtggca
ggaaatccaggccagccagggttaccaggtcctaaaggtgatccaggccaaaccataaca
cagccagggaagcctggcctgccaggtaatccaggcagagatggtgaagtgggacttcca
ggtgatcctggacttccaggccaaccaggcctgccaggaatacctggtagcaaaggagaa
ccaggtatccctggggttgggcttcttggaccaccaggtcccaaaggttttccaggaatt
ccaggacccccaggagcacctggaacacccggaagaatgggtccagatggccctcctggg
tcaccaggctttccaggaccaaagggagagccaggatttgggttacctgggccacctggg
ccaccaggattcccaggtttcaaaggaacacctggtccaaaaggtgatcgtggtttccca
ggacctccaggtcctccaggacgcactggcttggatgggctacctggaccaaaaggtgat
gttggatcaaatggacaacctggcccaatagggcctcctgggctgccaggaattggtatt
cagggaccaccaggaccaccaggaactccaggaccaataggccaacctggtttacatgga
ataccaggagaaaagggagacccaggacctcctgggtttgatgttccaggacccccagga
gaaagaggtagtccaggactccctggaacccctggtcttgtaggacccccaggatcacct
ggtctcccaggaaaagcaggtgtccctggattcccaggtgccaaaggagaaataggtatc
atgggacctccaggcccgcctggacctttgggaattcctggcaggagtggtgctcctggt
cttaaaggtgatgatggcatgcaaggtcagccaggtcttcctggccctgcaggagaaaaa
ggtagtaaaggagaacctggacttcctggtcctcctgcaccaatggatccagatttcctg
ggatcaaaaggagagaagggtgagcctggcttaccaggtattcctggactctcaggacca
aaaggctacccgggtttacctggagacccaggacaacctggactgagtggacaacctggg
tcaccaggactaccgggtcccaagggtaaccctggtctcccaggtccaccaggacttaca
ggacctcctggacttaaaggaaacattggtgacatgggttttcctggccctcaaggtata
gatgggccccctggacctcctggagttcccggacaaccaggctctccagggttaccagga
cagaaaggaaataaaggagatcctggtgtttcaggcattggtcttccgggtcatcctggt
ccaaagggtgaacctggtctgcctggatacccaggaagcccaggtatcaaaggttctgtg
ggagatactggtctgcctggattaccaggaagccctggagcgaaagggcagccaggcctg
cctggattcccaggaaccccgggacttcctggaccaaaaggtatgagtggacctcctggt
aaccctggccttccaggagaccctggtcctgtaggtggtggagggagtcctggaccacca
ggacctcctggtgaaaaaggcaagccaggccaagatggcattcctggaccagcagggcag
aaaggagaaccaggtcaaccaggctttggaatcccaggacctcctggactcccaggactt
tctggtcagaagggagatggaggatcacctggcattccaggaaatcctggtcttccaggc
tcaaaaggtgaaccaggctttcagggtttccctggtatgccaggtcccccaggtcctcct
ggttctcctggtccagctttagaaggccctaaaggaaaccctggacctcaaggccctcct
gggagaccaggtctaccaggttcagaaggtcctcgtggtccccctggaaatggaggtatt
aaaggagaaaggggaaacccaggcccacctgggcaacctggcttacctggtttgaaagga
gatccaggaccaccaggactcccgggtaatcctggccggccaggtctcaatggaatgaaa
ggagatcctggtctccctggagttccaggattcccaggaatgaaaggacccattggagta
ccaggttcaactggccccgatggggatccaggccttaccggacccccaggtcctcctgga
ttacctggtccttcaggacagagcattataatcaaaggagatgctggtcctccaggggtt
cctggccaacctggattaaaaggtccaccaggacttccaggccctcaaggcttaccaggt
ctaattggccctccaggagatccaggacgcactggacttccaggctttgatggtgcagga
gggcgcaaaggagacccaggtctgccaggacagccaggtacccgtggattggatggtccc
ccaggaccagacggaatgcaaggacctccaggtccccctggaaccacctcggttgcccat
ggattcctcatcacacgccacagccagacaacagatgcaccacagtgcccacagggaaca
gtccatatctatgaaggcttttctctcctgtatgtacaaggaaataaaagagcccatggt
caagacttggggactgctggcagctgtcttcgtcgattcagtaccatgccttttatgttc
tgcaacattaacaacatttgtaactttgcttcaagaaacgactattcttactggctttct
accccagagcccatgccaatgagcatggaacccctgaagggccagagcatccaaccattc
attagtcgatgtgcagtgtgtgaggcaccagctgtggtcattgcagttcacagccaaact
attcaaattccacattgtcctcagggatgggactctctgtggattggttattccttcatg
atgcatacaagtgcaggagcagaaggctcaggccaagccttagcctctccaggttcctgt
ttggaagaatttcgttcagctcccttcatcgaatgtcatggacggggaacatgcaactac
tacgccaattcctatagcttttggctagccactgttgatatgtcagacatgttcagtaaa
cctcagtcagagacactgaaagcaggagacttgaggacacgtattagccgatgtcaagta
tgcatgaagaggacataa
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