Phodopus roborovskii (desert hamster): 127218262
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Entry
127218262 CDS
T08852
Symbol
Ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03040
Spliceosome
prob05202
Transcriptional misregulation in cancer
prob05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127218262 (Ddx5)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
127218262 (Ddx5)
05205 Proteoglycans in cancer
127218262 (Ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
prob03041
]
127218262 (Ddx5)
03009 Ribosome biogenesis [BR:
prob03009
]
127218262 (Ddx5)
Enzymes [BR:
prob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127218262 (Ddx5)
Spliceosome [BR:
prob03041
]
Complex A
U1 snRNP components
U1 related factors
127218262 (Ddx5)
Complex B
127218262 (Ddx5)
Ribosome biogenesis [BR:
prob03009
]
Eukaryotic type
Pre-60S particles
Helicases
127218262 (Ddx5)
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
127218262
NCBI-ProteinID:
XP_051035247
LinkDB
All DBs
Position
Unknown
AA seq
622 aa
AA seq
DB search
MRDKEGSAAPAGTPPGPGLLPRFGAPRFGGSRTGPLSGKKFGNPGEKLVKKKWNLDELPK
FEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQN
FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL
APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE
CGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF
LKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRR
CDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFV
INYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQ
LVEDRGSGRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNG
VYSAANYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVANMHNGMNQQAY
AYPATAAAAPMIGYPMPTGYSQ
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgcgagacaaagaaggaagcgccgccccagcgggaacgccgcccggcccgggactcctc
ccccggtttggtgcgccaagattcggagggagtagaacaggacccctctctgggaagaag
tttggaaatcctggggagaaactagttaaaaagaagtggaatcttgatgagctgcccaaa
tttgagaagaatttttatcaggaacaccctgatttggccagacgaaccgcgcaagaggta
gatacatacagaagaagcaaggaaattacagtccggggtcacaactgtccaaaacctgtt
ctgaatttttatgaagcaaacttccctgcaaatgtcatggatgtgattgcaaggcagaat
ttcactgaacccactgctattcaagctcagggctggccagttgctctaagtggattggat
atggttggagtagctcagactggatctgggaaaacattatcttatttgctgcctgccatt
gtccacataaatcatcagccattcctagagaggggtgatgggcctatttgcttggtgctg
gcaccaactcgagaactggctcagcaagtgcagcaagttgctgctgaatactgtagagcc
tgtcgattgaagtctacttgcatctatggtggtgctcccaagggaccacagattcgtgat
ttggaaagaggtgtggaaatctgtattgcaacacctggaagactgattgactttttagag
tgtgggaaaaccaacctgagaagaacaacttaccttgtccttgatgaagctgatagaatg
cttgatatgggatttgaaccccaaatacggaaaattgtggatcaaataagacctgatagg
caaaccctaatgtggagtgcaacttggccaaaagaagtaagacagcttgctgaagatttc
ctgaaagactatattcatatcaatattggtgcactagaactgagtgcaaaccataacatt
cttcagattgtggatgtgtgccatgatgtagaaaaagatgaaaagcttattcgtctaatg
gaagagatcatgagtgagaaggagaataaaaccattgtttttgttgaaaccaaaagaaga
tgtgatgagcttaccagaaaaatgaggagagatgggtggcctgccatgggcatccacggt
gacaagagtcaacaggaacgtgactgggttctaaatgaattcaaacacggaaaagctcct
attctgattgctaccgatgtggcctccagagggctagatgtggaagatgtgaaatttgtc
atcaattatgactaccctaactcctcagaggattatattcatcgaattggaagaactgct
cgcagtaccaaaacgggcacagcatacactttctttacacctaataacataaagcaagtg
agcgaccttatctctgtgcttcgggaggctaatcaagcaattaatcccaagttgcttcag
ttggtcgaagacagaggttcaggtcgttccaggggtagaggaggcatgaaggatgatcgt
cgtgacagatactctgcaggcaaaaggggtggatttaatacctttagagacagggaaaat
tatgacagaggttattctagtctgcttaagagagattttggggctaaaactcagaatggt
gtttacagtgctgcaaattacaccaatgggagctttggaagtaattttgtatctgctggt
atacagaccagttttaggactggtaatccaacagggacttaccagaacggttatgatagc
actcagcaatatggaagtaatgttgcaaatatgcacaatggtatgaaccaacaggcatat
gcatatcctgctaccgcagctgctgcgcctatgattggctatccaatgccaacagggtat
tctcaataa
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