Phodopus roborovskii (desert hamster): 127218541
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Entry
127218541 CDS
T08852
Symbol
Hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04613
Neutrophil extracellular trap formation
prob05014
Amyotrophic lateral sclerosis
prob05034
Alcoholism
prob05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
127218541 (Hdac6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
127218541 (Hdac6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127218541 (Hdac6)
09165 Substance dependence
05034 Alcoholism
127218541 (Hdac6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
prob01009
]
127218541 (Hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127218541 (Hdac6)
04131 Membrane trafficking [BR:
prob04131
]
127218541 (Hdac6)
03036 Chromosome and associated proteins [BR:
prob03036
]
127218541 (Hdac6)
Enzymes [BR:
prob01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
127218541 (Hdac6)
Protein phosphatases and associated proteins [BR:
prob01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127218541 (Hdac6)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127218541 (Hdac6)
Membrane trafficking [BR:
prob04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
127218541 (Hdac6)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
127218541 (Hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
127218541
NCBI-ProteinID:
XP_051035514
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MEKKESGARGHTGRREFGGASQRRSLRKGQRSSRARSEGSSAMTSTGQDSSTRQRRSRHN
PQSSPQDSSATLKRGVKKGTALHSSPNLAEVKKKGKMKKLSQAVEEDLIVGLQGLELNPE
TRVSIGTGLVFDEQLNDFHCLWDDSFPECPERLHAIKEQLILESLLDRCVSFQARFAEKE
ELMLVHSLEYIDLMETTQYMNEGELRILADTYDSVYLHPNSYSCACLATGSVLRLVDAVL
GAEIRNGMAVIRPPGHHAQHSLMDGYCMFNHVAVAARYAQKKHRIQRVLIVDWDVHHGQG
TQFIFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTIGFGQGQGYTINVPWNQVGMRDADY
IAAFLHILLPVAFEFQPQLVLVAAGFDALRGDPKGEMAATPAGFAHLTHFLMGLAGGKLI
MSLEGGYNLHSLAKGVSASLHTLLGDPCPMLESPGVPCASAQTSISCTLEALEPFWEILV
RSVDPQEEDEVEEDKAEEEDEEGRWETAGLPMDTWPVLHDRTGLVYDEKMMSHCNLWDNH
HPETPQRILRIMCHLEELGLAARCVILPARPAMDAELLSCHSAEYVERVRATEKMKTREL
HREGANFDSIYICPSTFACAQLATGAACRLVEAVLSGQVLNGIAIVRPPGHHAEPDAACG
FCFFNSVAVAARHAQAIAGRALRILIVDWDVHHGNGTQHMFEDDPSVLYMSLHRYDRGTF
FPMGDEGASTQVGRAAGIGFTVNVPWNGPRMGDAEYLTTWHRLILPIAYEFNPELVLVSA
GFDAAQGDPLGGCQVTPEGYAHLTHLLMGLANGRVILILEGGYNLASISESMAACTHSLL
GDPPPPLALLRPPQPGALASITETIQVHRRYWRSLRLMKMEDKEECSSSKPKTTHPVSPK
GVTTPKAAVSAVESTLGDAKSKTAKAVLVQGQSSKQAARGATLDQATSNEPVGGSTTDQH
ASASATKNVPKQTTSEQAVEEAEPIQTPLASCADKQTTDASPIQGATAQRAPDQLIGRLS
SLKLRSGVQEAPESEEGLLAEAAGGQDMNSLMLTQGFGDFNAQDVFYAVTPLSWCPHLVA
VCPIPAAGLDTSQPCETCGTLQENWVCLTCYQVYCSRYVNAHMVHHHEASQHPLVLSCVD
LSTWCYLCQAYVHHQDLQDVKSAAHQNKFGEDIPHSH
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaggaatcaggtgcccgaggccacacaggtcgccgggaatttggcggtgcg
agccaaaggcggagtttgagaaaggggcagcgttcaagccgtgccaggagtgaaggctct
tcagccatgacctccactggccaggattcttctaccagacaacgaaggagtaggcacaat
ccccagtcatcccctcaggactccagcgccaccttgaagcgaggtgttaagaagggtact
gcactgcactccagccccaatctagcagaggtaaagaagaaaggcaaaatgaagaagctc
agccaagcagttgaagaagacctgatcgtggggcttcaaggcttggagctgaaccctgag
acaagagtatcgattggtactggattggtgtttgatgaacaactaaatgacttccactgc
ctttgggatgacagcttccctgaatgccctgagaggctccatgccatcaaagagcagctg
atcctggagagcctcctggaccgctgtgtgtcctttcaggcccggtttgctgagaaggag
gagctgatgttggttcacagcctggaatacattgacctgatggaaacaacccagtacatg
aatgaaggagaacttcgcatactagcagacacctatgattcagtttatctgcatccgaac
tcatattcatgtgcctgcctggccacaggctctgtcctcaggctggtcgatgctgtcctg
ggggctgagattcggaatggcatggccgtcatcaggcctccaggacaccatgcccagcac
agtcttatggatgggtattgcatgttcaaccatgtggctgtggctgcccgctatgctcaa
aagaagcaccgcattcagagggttcttatcgtggattgggatgtgcaccacggtcaaggg
acacagttcatcttcgaccaggaccccagtgtcctctatttctccatccaccgctatgag
cagggtcggttctggccccacctcaaggcttctaactggtccactataggttttggccaa
ggccagggatataccattaatgtaccttggaaccaggtggggatgcgggatgctgactac
attgccgctttcctgcacatcctgctgccagttgcctttgagtttcagcctcagctggtt
ctggtggctgctggatttgatgccctccgaggagaccccaagggagagatggccgccact
ccagcaggatttgcccacctaactcattttctcatgggtctggcaggaggcaagttgatt
atgtctctggagggcggctataacctccattccctggctaagggtgtcagtgcatcactc
cacacccttcttggagacccttgccccatgctggagtcccctggtgtaccttgtgcaagt
gcccagacttcgatctcttgcacgctagaagcccttgaacccttctgggagatccttgta
agatcagttgatccccaggaggaagatgaagtagaggaagacaaggccgaagaggaagat
gaggaaggccgctgggagactgctggactgccaatggatacatggccagtgctgcatgat
cgcactgggttggtctatgatgaaaagatgatgagtcactgcaacctatgggacaatcat
caccctgagacacctcagcgcatcttaaggatcatgtgccacctggaggagctgggcctc
gcagcacgctgtgtcatcctacctgcgcggcctgccatggatgctgagcttctttcttgc
cacagtgctgagtacgtggagcgtgtccgggccacagaaaagatgaaaacccgggagctg
caccgggaaggtgccaactttgactccatctacatctgccccagcacctttgcctgtgcg
cagcttgccacaggcgctgcctgccgcctggtggaagctgtgctttcaggacaggtgttg
aacggcattgcaatagtgcgtcctccaggacaccatgcagaaccagatgctgcttgtggt
ttctgctttttcaactctgtagctgtggctgctcgccatgcccaagccattgctgggcgt
gccctgcggatcctgatcgtggattgggatgttcatcatggtaatggaactcagcacatg
tttgaagatgaccccagtgtattatacatgtccctgcaccgatatgaccgtggcactttc
ttccctatgggggatgaaggtgccagtacccaagtaggccgagctgcgggtataggcttc
actgtcaacgtgccctggaatgggccccgaatgggagatgctgaatacctgacaacctgg
catcgtctgatacttcccattgcctatgagtttaacccagaactggtgttggtttcagct
ggctttgatgctgcacaaggggacccactggggggctgccaagtgacacctgagggttat
gcccaccttacccacctgctgatgggccttgccaatggccgtgttatccttatcctagag
ggtggctacaacttggcatctatctctgaatctatggctgcctgcacccattccctcctt
ggagacccaccacccccgcttgccttgctccgaccaccacagccaggagccctggcctca
atcactgagaccatccaagtccatcgcagatactggcgaagtttgcggttgatgaagatg
gaagacaaggaagaatgttccagctctaagcccaaaacgacccatcctgtgtcacctaag
ggagtgaccacacccaaagcagcagtatctgcagtagaatctactctaggcgatgctaaa
tcaaagacagctaaggcagtgcttgttcagggccagtcctcaaaacaagctgctagggga
gctaccctggaccaggccacctcaaatgagcctgtgggaggaagcactactgaccagcat
gcctcagcatcagccacaaaaaatgtacctaagcagaccacctcagagcaggctgtggaa
gaagcggagccaatccaaactcctctagcctcatgtgcagacaagcagactactgatgcg
tcccctatacagggagccacagcccagcgggcccctgaccagctgattgggagactcagc
agtttgaaattacgaagtggcgtgcaggaggcccctgaatccgaggagggcctactagca
gaagcagctggaggtcaggatatgaacagcttgatgctgacacaaggatttggggacttt
aatgcccaggatgtattttatgctgtgaccccactatcctggtgtccccatttggtggca
gtatgccccattcctgcagcaggcctggatacatcccaaccatgtgagacctgtggaaca
ctccaggagaactgggtgtgtctgacttgctatcaggtgtactgtagtcgttatgtcaat
gcccatatggtccaccaccatgaagcctctcaacatccactagtcctcagctgtgtggac
ctgtctacctggtgttatctctgtcaggcttatgtccaccaccaggatctccaagatgtg
aagagtgctgcccaccagaacaagtttggggaggacattccccactcacactaa
DBGET
integrated database retrieval system
