Phodopus roborovskii (desert hamster): 127218694
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Entry
127218694 CDS
T08852
Symbol
Abca5
Name
(RefSeq) cholesterol transporter ABCA5 isoform X1
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
127218694 (Abca5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
prob02000
]
127218694 (Abca5)
Transporters [BR:
prob02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
127218694 (Abca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
AAA_23
Rad17
Motif
Other DBs
NCBI-GeneID:
127218694
NCBI-ProteinID:
XP_051035662
LinkDB
All DBs
Position
Unknown
AA seq
1643 aa
AA seq
DB search
MATAIREVGVWRQTRTLLLKNYLVKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEE
VSDIELNPMDKSSLSNLILGYTPVNNMTSSIMQRVSTDHLPDVIITEEYASEKEMLVSSL
SKSSNFVGVVFKDIMSYELRFFPDMIPVSSIYMDSRAGCSKSCDAAQYWSSGFTVLQASI
DAAIIQLKTNVSLWKELESTKAVIMGETAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHI
VAEKEKKLKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMAVIATASSLFPQSSSIVIF
LLFFLYGLSSVFFALMLTPLFKKSKHVGAAEFFVTVAFGFVGLLIVLMENFPKSLVWLFS
PFCQCTFLIGIAQVMHLEDFNKGALFSNMTEGPYPLIITIIMLALDSVFYVLLAVYLDQV
IPGEFGLRRSSLYFLKPSYWSKTKRNYKELSEGNINGNISLSEIVEPVSSEFIGKEAIRI
SGIQKAYRKKNENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI
YGHRVSEIDEMFEARKMIGICPQLDINFDVLTVEENLSILASIKGIPANNIIQEVQKVLL
DLDMQAIKDNQAKKLSGGQKRKLSLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNLLKYR
KANRVTLFSTHFMDEADILADRKAVISQGMLKCVGSSIFLKSKWGIGYRLSMYIDRYCAI
ESLSSLVRQHIPAATLLQQNDQQLVYSLPFKDMDKFAGLFSALDIHSNLGVISYGVSMTT
LEDVFLKLEVEAEIDQAVDYSVFTQQPVEEEMDSKSFDEMEQSLLILSETKASLVSTMSL
WKQQVSTIAKFHFLTLKRESKSVRSVLLLLLIFFAVQIFMFLVHHSFKNAVVPIKLVPDL
YFLRPGDKPHKYKTSLLLQNSTDSDISDLINFFTYQNIMVTMFNDSDYVSAAPHSAALNV
VHSEKDYVFTAVFNSTMVYSLPVMMNIISNYYLYRLNVTEAIQIWSTPFIQEITDIVFKV
ELYFQAALLGIIVTAMPPYFAMENAENHKIKAYTQLKLSGLLPSAYWIGQAVVDFPLFFI
VLSLMLGSLFAFHHGLYFYPVKFLAVVFCLIAYVPSVILFTYVASFTFKKILNTKEFWSF
IYSVTALACIAVTEITFFLGYSVSTVFHYTFCIAIPIYPLMGCLISFIKGSWKNMPKNED
TYNPWDKLLVAVIMPYLQCILWIFLLQHYEKKHGGRSIRKDPFFRTLSQKSKNKKFPEPP
VNEDEDEDVKAERLKVKELMSCQCCEEKPAIMVCNLHKEYDDKKDFLHSRKTKKVATKYI
SFCVRKGEILGLLGPNGAGKSTIINILVGDVEPTSGQIFLGDYISHSNEDDESIKCMGYC
PQTNPLWPDITLQEHFEIYGAVKGMSASDMKEVISRITNALDLKEHLQKTIKKLPAGIKR
KLCFALSMLGNPQVTLLDEPSTGMDPRAKQHMWRAIRTAFKNKKRAALLTTHYMEEAEAV
CDRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDWIENLEIDRLQREILYIFPNASR
QESFSSILAYKIPREDVQSLSQSFAKLEDAKHTFAIEEYSFSQATLEQVFVELTKEQEEE
DNSCGTLNSSLWWERTQEDRVVF
NT seq
4932 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgcaattagggaagtgggagtttggagacagactagaacacttctactgaaa
aattacctagttaaatgcaggactaaaaaaagcagtgttcaggaaattctttttcctcta
ttttttttattttggctaatattaattagcatgatgcatccaaataagaaatatgaagaa
gtatctgatatagaacttaaccccatggacaaatctagtctttctaatcttattcttgga
tatactcctgtgaataatatgacaagcagcatcatgcagagagtatctactgatcatctt
cctgatgttataattactgaagaatatgcaagtgagaaagaaatgctagtatccagtctt
tctaagtcaagcaactttgtaggtgtggttttcaaagacatcatgtcttatgaacttcgt
ttttttcctgatatgattccagtgtcttctatttatatggattcaagagctggttgttca
aagtcatgtgatgctgctcaatactggtcctcagggtttacagttttacaggcatcaata
gatgctgccattatacagttgaagaccaatgtttctctgtggaaggagctggagtcaact
aaagctgttatcatgggagaaactgctgttgtagaaatagacacttttccccgaggagtc
attttaatatatctagtcatagcattttcaccttttggatactttttggcaattcacatt
gtagcagaaaaagaaaaaaagttaaaggaatttttaaagataatgggacttcatgacact
gctttttggctttcctgggttcttctgtatacaagcttgattttccttatgtcacttctt
atggcagtcatcgcaacagcttcttccctattccctcagagtagcagcattgtgattttt
ctactgttcttcctttatggattatcatctgtgttttttgctttaatgctgacacctctt
tttaaaaaatcaaaacacgtgggagcagctgagttttttgtcactgtggcatttggattt
gttggccttttgatagtcctcatggaaaacttccccaaatcactagtgtggctcttcagt
cctttctgtcagtgtacctttctgatcggtattgcccaggtcatgcatttagaagatttt
aataaaggtgccttattttctaatatgacggaaggcccctaccctctaatcattactatt
atcatgctagctcttgatagtgtattctacgtcctcctcgctgtctatcttgatcaagtc
attccaggggaatttggcttaaggagatcatctttatactttctaaaaccatcgtactgg
tcaaaaaccaaaagaaattacaaggagctatcagagggcaacattaatgggaatattagt
cttagtgaaattgttgagcctgtttcttcggaatttataggaaaagaagctataagaata
agtggtattcagaaggcctatagaaaaaagaatgaaaatgtggaggctttgagaaatttg
tcatttgacatatatgaaggtcaaattactgcattactgggccatagtgggacaggaaaa
agtacattgatgaatattctttgtgggttgtgcccaccatctgatgggtttgcttctata
tatggacacagagtctctgaaatagatgagatgtttgaagcaagaaaaatgattggcatt
tgtccacagttagatataaactttgatgttttgacagtagaagaaaatttatcaattttg
gcttcaatcaaaggaatcccagccaacaatataatacaagaagttcaaaaggttttactg
gatttggacatgcaagccatcaaagataaccaagcaaaaaaattaagtggtggccaaaaa
agaaaattgtctttaggaattgcagttcttggaaatccaaagatactactgctggatgag
ccaacagcaggaatggacccctgctctcgtcacattgtttggaatcttttaaaatacagg
aaagctaacagagtgacactattcagtactcattttatggatgaagctgacattcttgct
gataggaaagctgtcatatcacaaggaatgctgaaatgtgttggttcttcaattttccta
aaaagtaaatggggaattggctaccgtctgagcatgtatattgacagatactgtgccata
gaatcactctcttccctggtgaggcagcacataccagcagctaccttactgcaacagaat
gatcaacagcttgtgtatagcttgcctttcaaagacatggacaaatttgcaggtttgttt
tctgctctagacattcattcaaatctgggtgttatttcttatggtgtttccatgacaaca
ttggaagatgtattcttaaagctagaagttgaagcagaaattgaccaagcagtagattat
agtgtgtttacacaacagccagtggaggaagagatggactcaaaatcttttgatgaaatg
gaacagagtttactgattctttctgaaacaaaagcttctctagtgagcaccatgagcctt
tggaaacagcaagtgtccacaatagccaagtttcatttcctcacattgaaacgagagagc
aagtcagtacgctcagtgttgcttctgcttttaatattttttgcagttcagatttttatg
tttttggtgcatcattctttcaaaaatgctgtggttcctatcaaacttgttcctgacttg
tatttcttaagacctggagataaacctcataaatataaaacaagcctgctgcttcaaaat
tctactgactcagatatcagtgatcttattaacttttttacataccagaacataatggtg
acaatgtttaatgacagtgattacgtatctgctgctccccatagtgcagctttgaatgtg
gtgcattcagaaaaggactatgtttttactgctgttttcaacagtactatggtttattct
ctaccagtaatgatgaacatcattagtaactactatctttatcgtttaaatgtgactgag
gctatccagatctggagtaccccattcattcaagaaattactgacatagtttttaaagtt
gagctatattttcaagcagctttgcttggaatcattgttactgcaatgccaccttacttt
gccatggaaaatgcagagaatcataagatcaaagcttatacgcaacttaaactttctggt
cttttgccatcagcctattggattggacaagctgttgtggattttcccttattttttatt
gttctgagtttgatgctgggaagtttatttgcatttcatcatggactatacttttatcct
gtaaaatttcttgctgtggtgttttgccttattgcttacgtaccatcagttattcttttc
acttatgttgcttctttcacctttaagaaaattttaaataccaaggaattttggtcattt
atctattctgtgacagcattggcttgtattgcagtcactgaaataactttctttttggga
tattcagtttcaactgtttttcattacaccttttgcatagccattccaatctacccactc
atgggctgcctgatttctttcataaagggttcttggaaaaatatgccaaaaaatgaggat
acctacaatccatgggacaagcttttagttgctgttataatgccctacctgcagtgtata
ctgtggattttcctcttacaacactatgagaaaaaacatggagggagatcaataagaaag
gatccctttttcaggaccctctcacaaaagtccaaaaataagaagtttccagaaccacca
gtcaatgaggatgaggatgaagatgtcaaagctgaaagactgaaggttaaagaactgatg
agctgccagtgttgtgaggagaagccagcaattatggtatgcaatttgcataaagaatat
gatgacaagaaagattttcttcattcaagaaaaacaaagaaagtagcaaccaaatacatc
tcgttctgtgtgagaaaaggagagatcttgggactgttgggtccaaatggtgctggtaaa
agcacaattattaatattctagttggggatgttgaaccaacctcaggccagatatttcta
ggtgattatatttcacattcaaatgaggacgatgaatccatcaagtgtatgggttactgc
cctcagacaaaccccctgtggccagacattactctgcaagagcattttgaaatttatgga
gctgtgaaagggatgagcgcaagtgacatgaaagaagtaataagccgaataacaaatgcc
cttgatttgaaagaacatcttcagaaaactataaagaaactacctgcagggatcaagcga
aagctgtgttttgctctcagtatgctggggaacccacaggttactctactggatgaacca
tccacaggtatggaccccagagccaaacagcacatgtggcgagctattcgaactgcattt
aaaaacaaaaagcgggctgctcttctgacgactcattacatggaagaagcagaggctgtc
tgtgacagagtggcaattatggtgtccgggcagttaagatgtattggcacagtacagcat
ctaaagagtaagtttggcaaaggctactttttggaaattaaattgaaggactggatagaa
aacctggaaatagaccgccttcaaagagaaatcctatatattttcccaaatgcaagccgc
caagagagcttttcttctattttggcttataaaattcctagagaagatgttcagtccctg
tcacaatcctttgctaagttggaagacgcaaaacacacttttgccattgaagaatatagc
ttttctcaagcaacactggaacaggtttttgtagaacttaccaaagaacaagaagaagaa
gataatagttgtgggactttaaacagctcactttggtgggagagaacacaggaagacaga
gtagtattttaa
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integrated database retrieval system
