Phodopus roborovskii (desert hamster): 127218786
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Entry
127218786 CDS
T08852
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
127218786 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prob03400
]
127218786 (Lig3)
Enzymes [BR:
prob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127218786 (Lig3)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
127218786 (Lig3)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
127218786
NCBI-ProteinID:
XP_051035721
LinkDB
All DBs
Position
Unknown
AA seq
1018 aa
AA seq
DB search
MTLAFKILFPRNLCALGRKELCLFPEQNHWPVIRQFSQWLETDLLRGCCLLQRRKPALSF
QGGHLRPRATHLVFFPGSHVGLCTGPSKMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQ
HIADLSSKAAGTPKKKTAVQAKLTTTGQVTSPVKGASLATSTNPRKFSGFSAVKTNNTEQ
GPSSPAPKTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGDG
FHGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDEMTRDLEQGDVSETIRVFF
EQSKSFPPAAKSLLTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKH
DLKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKDPGRRRALSVQASLM
TPVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKV
AHFKDYIPRAFPGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCI
YFNDVSLMDRPLCERRKFLHDNMVEIQNRIMFSEMKQVTKASDLADMINRVIREGLEGLV
LKDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDP
DSQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKK
AAVWEITGAEFSKAEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADF
AVVAGDEGSSTTGGSNGENEGTSGSAEPRKAPKTTPSKSSASGKKAQQKLNNPNDRGGNK
VIPKPFPMKPGDKLAVRSSPVKAGVKRKAADETPETQCPTKVLLDVFTGVRLYLPPSTPD
FKRLKRYFVAFDGDLVQEFDMASATHVLGDRDKNTEAQLVSSEWIWACIRKRRLIAPC
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgactttggctttcaagatcctcttcccaagaaacctttgtgcccttggcagaaaagaa
ctgtgcctgttccctgaacagaatcactggcctgtcataagacagttcagccagtggttg
gaaacagatctccttcgtgggtgctgcctcctgcagagaagaaagcctgccctatctttc
cagggaggtcatctaagaccacgagccacccaccttgttttcttcccagggtcgcatgtg
ggactctgtactggccccagtaagatggcggagcagcggttctgtgtggactatgccaag
cggggcacagctggctgcaagaaatgcaaggagaagattgtaaagggcgtatgccgcatt
ggcaaagtggtgcccaatcccttctcagagtctgggggtgatatgaaagagtggtaccat
attaagtgcatgtttgagaaactggagcgggctagggctaccaccaaaaaaattgaagac
ctcacagagctggaaggctgggaagaactggaagataacgaaaaggaacagatcagccag
cacattgcagacctgtcttctaaagcagctggaacaccaaagaagaaaacagctgtccag
gctaagctgacaaccactggccaggtgacatcccccgtgaaaggtgcttcacttgctact
agtaccaatccccggaaattttctggattttcagcagtcaaaaccaacaacactgagcaa
ggcccatcaagtcctgcccctaagacaagtctgtctgcaagtaaatgtgaccctaagcac
aaagactgtctcctacgagagttccggaagctgtgcgccatggtggctgaaaatcctagc
tacaatacaaaaacccagatcatccaggacttcttgcagaagggctctgcaggagatggc
ttccatggtgatgtgtacctaacagtgaagctgctgctgccaggagtcattaagagtgtt
tacaacttgaacgacaagcagattgtgaaactttttagccgaatttttaactgcaatcca
gatgagatgacccgggacctagaacagggtgacgtgtcagagacgatcagagtcttcttt
gagcagagcaagtcttttcccccagctgccaagagcctcctcaccatccaggaagtggat
gccttcctcctgcacctctccaagctcaccaaagaggatgagcagcagcaggcccttcag
gacattgcctccaggtgtacagccaatgaccttaagtgtatcatccggctgatcaaacat
gatctgaagatgaactcgggtgcaaagcatgtgttagatgcccttgaccccaatgcttat
gaagccttcaaagcctcacgcaacctgcaagacgtggtggagcgggtccttcgcaatgaa
caggaggtggagaaggacccaggccggcgacgggctctgagtgttcaggcctcactgatg
actcctgtgcagcccatgctggccgaggcctgcaagtccatcgagtatgcaatgaagaag
tgtcccaatggcatgttctctgagatcaagtacgatggtgagcgagtccaggtgcataag
aagggggaccacttcagctacttcagccgcagtctcaagcctgtcctgcctcacaaggtg
gcccattttaaggactacatccccagagcctttcctgggggtcagagtatgatcttggac
tccgaggtgctcctaattgacaataacactggcaaaccactgccctttgggactctggga
gtgcacaagaaagctgccttccaggatgctaatgtctgcctgtttgtttttgattgcatc
tactttaatgatgtcagcttgatggacaggcctctctgtgagcgaaggaagtttcttcat
gacaacatggttgaaatccagaaccggatcatgttctcagaaatgaagcaagtcacaaaa
gcctcagacctggctgacatgataaaccgggtgatccgagagggcttagaagggctggtg
ctaaaggatgtgaagggtacatatgagcctgggaagcggcactggctgaaagttaagaaa
gactatttgaacgagggggccatggcagatacagctgatctagtggttcttggggccttc
tatgggcaagggagcaaaggtggcatgatgtccatcttcctcatgggctgctatgaccct
gacagccagaagtggtgcactgtcaccaaatgtgctggaggccacgatgatgccacactt
gcccgactgcagaaggagctagatatggtgaagatcagcaaggatcccagcaagatacct
agttggctgaagatcaataagatctactaccctgacttcattgttccagacccaaagaaa
gctgctgtgtgggagattactggggcagaattctccaaagcagaggctcacaccgctgat
gggatctccatccgatttcctcgatgcactcgaatccgggacgacaaggactggaaatct
gccactaacctcccccaactcaaggaactgtaccagctatccaaagaaaaggcagacttt
gctgtagtggctggagatgaggggagttccactaccggaggtagcaatggcgagaatgag
ggcacttctgggtctgctgaaccccgcaaagcccccaagacgacacctagtaagtcctct
gccagtggcaagaaggcccaacagaagctgaataaccccaatgacagaggtggcaacaag
gtgattccaaagcctttccccatgaaaccaggagacaagctggctgtgaggtcttctcca
gtgaaagcaggggtgaagaggaaagctgctgatgagaccccagagacccagtgcccgaca
aaggtgctgttggatgtcttcactggggtgcggctctatttgccaccttccacaccagac
ttcaaacggctcaaacgctactttgtggcattcgacggggacctggtacaagaatttgac
atggcctcagccacacatgtgctgggtgacagggacaagaacacagaggcccagctggta
tcttcagagtggatttgggcatgtatcaggaaacggaggctgatagctccctgctag
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integrated database retrieval system
