Phodopus roborovskii (desert hamster): 127218906
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Entry
127218906 CDS
T08852
Symbol
Prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127218906 (Prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
prob03041
]
127218906 (Prpf8)
Spliceosome [BR:
prob03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
127218906 (Prpf8)
Complex C
U5 SnRNP specific factors
127218906 (Prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
127218906
NCBI-ProteinID:
XP_051035945
UniProt:
A0AAU9Z3U0
LinkDB
All DBs
Position
Unknown
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
SQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtgtttccttaccgagggccgggtaacccggttcccggccctctagccccg
ctaccggactacatgtcagaagaaaagctgcaggagaaagctcgaaaatggcagcaattg
caagccaagcgctatgcagagaagaggaaatttgggtttgtggatgctcagaaggaagac
atgcccccagaacatgtcaggaagatcattcgagaccatggagacatgaccaacaggaag
tttcgccatgacaaaagggtctatttgggagccctcaagtacatgccccatgctgttctc
aagctcctggagaacatgcccatgccttgggagcagattcgggatgtacctgttctgtac
cacatcactggagccatttcctttgtcaatgagattccctgggtcattgagccagtgtac
atctctcagtgggggtccatgtggatcatgatgcgtcgagaaaaaagagacaggaggcat
tttaagaggatgcgtttccctcctttcgatgatgaggaaccgcccctggattatgctgac
aacatcttagatgttgagccactggaagccattcagcttgagctggatcctgaagaggat
gcccctgtgttggactggttctatgaccaccagccattgagagacagtaggaagtatgtt
aatggttccacttaccaacgctggcagttcacattgcctatgatgtccaccctctatcga
ctggccaatcagcttctgactgacttggtggatgacaactatttctatctgtttgatctg
aaggccttctttacctctaaggcactcaatatggccattcctggaggaccaaaatttgaa
cctcttgttcgagacatcaacctacaggatgaagactggaatgaattcaatgatattaat
aagatcatcatccgtcagcctattcgtactgagtacaagattgcttttccttacctgtat
aacaaccttccacaccatgtccacctgacttggtaccacactcctaatgttgtcttcatc
aagactgaggatcctgatttgccagctttctactttgatcctctgatcaacccaatctct
catagacactcagtcaagagccaggaaccactgcctgatgatgatgaggaatttgaactc
cctgagtttgtggagccctttctgaaggacacacccctctatacagacaacacagccaat
ggcattgccctgctctgggcaccacggccctttaatctacgctctggtcgtactcgccgg
gccctggacataccccttgtcaagaactggtatcgggagcattgtcctgctgggcagcct
gtgaaggttcgagtttcctatcagaaactgcttaagtactatgtgctgaatgccctcaag
cataggcctcctaaagcccaaaagaagaggtatctgttccgctcattcaaagctaccaaa
ttctttcagtccacaaagctagactgggtggaggtggggctgcaggtttgccgccagggc
tacaacatgctcaaccttctcattcaccggaagaacctcaactacctgcacttggactat
aacttcaacttgaagcctgtcaagacactcaccaccaaggaaagaaagaaatctcgtttt
gggaatgctttccatctgtgtcgggaagtactgcgtttaactaaactggttgtggatagt
catgtgcaataccgcttgggcaatgtagatgccttccagctggcagatggattacagtat
atatttgcccacgtggggcagttgactggcatgtaccgatacaaatacaaactgatgcgg
cagatccgcatgtgcaaggacttgaagcatctcatctattaccgcttcaacacgggccct
gtagggaaaggccctggctgtggtttctgggctgctggatggcgggtctggctgtttttc
atgcgtggaattacccctttgctagagcgatggctgggcaacctcctggcccgacagttt
gaaggccgtcactcaaagggggtggcaaagacagtaacaaagcaaagagtggagtcccat
tttgaccttgagcttagggcagctgtgatgcatgatattctggacatgatgcctgaaggc
atcaaacagaacaaggcccgaacaattctgcagcacctcagtgaagcctggcgctgctgg
aaggccaacattccctggaaggtcccaggactaccaacacctatagagaacatgattctt
cggtacgttaaggccaaggctgattggtggaccaatactgctcactacaaccgtgaacga
atccgccgtggggccactgtagacaagactgtctgcaaaaagaacctgggccgcctcacc
cgcctgtacctgaaggcagaacaggagcggcagcataattatctgaaggatgggccttac
attacagcagaggaagcagtggcggtgtatactaccactgtgcattggttggaaagtcgt
agattctctcccatcccattccctccactctcctacaagcatgacaccaagttgctcatc
ttagctctggagcgcctcaaggaagcttatagtgtaaagtctaggttaaaccagtctcag
agggaggagctgggtctgatcgagcaagcctatgacaacccccatgaggctttgtcccgc
atcaagcgtcacctcctcacacagagagcttttaaggaagtgggcattgagtttatggat
ctctatagccacctggtgccagtgtatgacgtggaacccctggagaaaataactgatgcc
tacctggaccagtacctgtggtatgaagcagataagcgccgtcttttcccaccctggatc
aagcctgctgacacagaaccacctccactgcttgtttacaagtggtgccaaggcatcaat
aatctgcaggatgtgtgggagaccagtgagggcgagtgcaatgtcatgttggagtctcgc
tttgagaagatgtatgaaaagattgacttgaccctgcttaatagactgctgcgactcatt
gtggaccacaacatagctgactacatgacagccaagaacaatgttgtcattaactataag
gacatgaaccatacaaattcatatgggatcatcagaggcctgcaatttgcctcattcatt
gtacagtactatggcttggtgatggatttgcttgtattgggattgcaccgggccagtgag
atggctgggcctcctcagatgccaaatgactttcttagtttccaagacatagccactgag
gctgcgcacccaatccgactcttctgtagatacattgatcgcatccatattttcttcagg
ttcacagcagatgaagctcgggatctgatccagcgttacctgacagagcatccagacccc
aataatgaaaacattgttggctacaataacaagaaatgctggcctcgagatgcccgtatg
cgcctcatgaagcatgatgtcaacttgggtcgggctgtgttctgggacatcaaaaatcgg
ctgccacgatcagtgactacagtacagtgggagaatagctttgtgtctgtgtacagtaaa
gacaaccccaacctgctgttcaacatgtgtggctttgagtgccgcatcctgcctaagtgc
cgtaccagctatgaagaattcacccacaaggacggggtctggaacctacagaatgaggtt
accaaggagcggacagcacagtgtttcctgcgtgtggacgatgagtcaatgcaacgcttt
cataaccgagttcgtcagattctaatggcctctggctccaccacctttaccaagattgtg
aataagtggaataccgctctcatcggccttatgacatattttcgagaggctgtagtgaat
acacaggaactcctagacttattggtaaagtgtgaaaacaagatccagacacgtatcaag
attggattgaactccaagatgccaagtcggttcccccctgttgtgttctacacccctaag
gagctgggtgggcttggcatgctctcaatgggccatgtgctcatcccccagtctgacctc
aggtggtccaagcaaactgatgtgggtatcacacacttccgttcaggaatgagtcatgaa
gaagaccaactgattcccaatttataccgctacatacagccgtgggagagcgagttcatt
gactctcaacgggtctgggctgagtatgcactcaagagacaggaggctattgctcaaaac
agacggttgactttagaagatttagaagattcatgggatcgaggcataccacggatcaat
accctgttccagaaggaccggcacacattagcttatgataagggctggcgtgtccgaact
gacttcaagcagtaccaggttttgaagcagaatcccttctggtggacacatcagcggcat
gatggcaagctctggaacctcaacaactaccgcacagatatgattcaggccctgggtggt
gtggagggcattctggagcacactctcttcaagggtacttacttccctacctgggaaggt
ctgttctgggaaaaagccagtggctttgaggaatccatgaagtggaagaagctaaccaat
gctcagcggtcaggattaaaccagattcctaatcgtagattcactctctggtggtccccc
acaatcaatcgagccaatgtgtatgtaggctttcaggtgcagctggacttgacaggaatc
ttcatgcatggcaagatccccacattgaagatctctctcatccagatattccgagctcac
ctgtggcagaagatccatgagagcatcgtgatggacttatgtcaggtctttgaccaggaa
ctggatgcactggaaattgagacagtacaaaaggagacaatccatccccgaaaatcctat
aagatgaactcttcctgtgctgatatactactctttgcttcctataagtggaatgtctcc
cggccctcactgctggcagactccaaggatgtgatggacagcacaacgacacagaagtat
tggattgacatccagttacgatggggggactatgattcccatgatatcgagcgctatgcc
cgggccaagttcctggattacaccacagacaacatgagtatctacccttctcccacaggt
gtgctcattgccattgacctggcttataatctacacagtgcctatggaaactggtttcca
ggcagcaagcctcttatacagcaggctatggccaagatcatgaaggcaaatcctgccttg
tatgtattacgtgaacggatccgcaaaggactgcagctgtattcatctgagcccactgag
ccttatctgtcctctcagaactatggtgaactcttctctaaccagattatctggtttgtg
gatgacaccaatgtctatagagtgaccatccacaagacctttgaggggaatttgacaacc
aaacccatcaatggggccatcttcatctttaacccacgcactgggcagcttttcctgaag
ataatccatacatctgtgtgggctggacagaagcgtttgggtcagttggccaagtggaag
acagctgaggaagtagctgccctgattcgatctctgcctgttgaggaacagcctaaacag
atcattgtcaccaggaagggcatgcttgatccattggaggtacacttgctggacttcccc
aatattgtgatcaaagggtcggagctccagctccccttccaggcttgtctcaaggtggaa
aagtttggtgatctcatccttaaagccacagagccccagatggttctcttcaacctctac
gatgactggctcaagactatctcatcctacacggctttctcccgtctcatcctgattctg
cgtgctctacacgtgaacaatgatagggcaaaggtgatcctgaagccagacaaaactact
attacagaaccccaccacatctggcccacgctgactgacgaggagtggatcaaggtggag
gtgcaactcaaggacctgatcttggccgactacggcaagaaaaacaatgtgaatgtggcc
tcactgacacaatcagaaattcgagacatcatcctagggatggagatctcagcaccatca
cagcagcggcagcagatagctgagattgagaaacagaccaaggaacagtcacagctcact
gccacacagactagaactgtcaacaagcatggcgatgagattatcacctccaccactagc
aactatgagactcagaccttctcatcaaagactgaatggagagtcagggccatctctgct
gccaacctgcatctacgaaccaatcacatttatgtttcatctgatgacatcaaggagact
ggttatacttacattcttcccaagaatgtgcttaagaagttcatctgcatctctgatctc
cgtgcccaaattgcagggtacctatatggggtgagtcctccggataaccctcaagtgaag
gagatccgttgcattgtgatggtgccacagtggggcactcaccagactgtgcacctgccc
agccagctgccccagcatgagtacctcaaggagatggaacccttaggttggatccacact
caacccaatgagtctccccagctatcaccccaagatgtcaccactcatgccaagatcatg
gctgacaacccatcttgggatggcgagaagacaattattatcacctgcagcttcacccca
ggctcttgcacactgacagcctacaagttgacccccagtggctatgagtggggccgacag
aacactgacaagggcaacaaccccaaaggctacctgccctcgcactatgagagggtccag
atgctcctgtcagaccgattcctcggcttctttatggttcctgcccagtcctcctggaac
tacaactttatgggtgttcggcatgatcccaacatgaaatatgagctgcagctggcaaac
cccaaggaattctaccatgaggtccataggccctcccacttcctcaactttgccctcctg
caggagggtgaggtctactctgcagacagagaggacctctacgcctag
DBGET
integrated database retrieval system
