Phodopus roborovskii (desert hamster): 127218916
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Entry
127218916 CDS
T08852
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03030
DNA replication
prob03420
Nucleotide excision repair
prob03430
Mismatch repair
prob03440
Homologous recombination
prob03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127218916 (Rpa1)
03420 Nucleotide excision repair
127218916 (Rpa1)
03430 Mismatch repair
127218916 (Rpa1)
03440 Homologous recombination
127218916 (Rpa1)
03460 Fanconi anemia pathway
127218916 (Rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
prob03000
]
127218916 (Rpa1)
03032 DNA replication proteins [BR:
prob03032
]
127218916 (Rpa1)
03400 DNA repair and recombination proteins [BR:
prob03400
]
127218916 (Rpa1)
Transcription factors [BR:
prob03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
127218916 (Rpa1)
DNA replication proteins [BR:
prob03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
127218916 (Rpa1)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
127218916 (Rpa1)
MMR (mismatch excision repair)
127218916 (Rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
127218916 (Rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
127218916
NCBI-ProteinID:
XP_051035981
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPTLQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEGEQLASNCICQVNRFIVNTLKDGRRVVILMDLEVVKSAEEVGIKIGNPVPYNE
GHGQQQVAPSPAPAPAPAQAATPPVSKPQPQSGSLGMGSTMAKTYGASKPFGKPAGTGLL
QPSGGTQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIR
ATAFNDQVDKFFPLIELNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLLCEDGHH
LPTVQFDFTGIGDLESKSKDSLVDIIGICKSYEDSTKITVKSNNREVAKRNIYLMDMSGK
VVTATLWGEDANKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTIIMNPDIPEAYKLRGW
FDSEGQALDGVSISDLRSGGTAGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLRKE
NCMYQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNVADFQENQWVTCFQE
SAEAILGQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDV
KPVDYRDYAKRLIMNIRRNI
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggtgggacacctgagcgagggggccattgcggccataatgcaacagggagatacatcc
ataaagcccacccttcaagtcattaacatccgtcccattactacagggaatagtccgccc
cggtatcgactgcttatgagtgatggattgaacacactctcttctttcatgttggccaca
cagctgaaccctcttgtggagggggagcagctggccagtaactgcatctgccaggtcaac
cgattcatcgttaataccctgaaagatggaaggagagtagttattttgatggacttggaa
gttgtgaaatcagctgaagaggttggaataaagattgggaatccagtgccctataatgaa
ggacatgggcagcaacaagtagccccttccccagccccagccccagctccagcccaggca
gccacaccaccagtcagcaagccccagccacagagtgggagcttgggaatgggttctact
atggctaagacgtatggtgcctcaaagccatttggaaaacctgctggaactggcctgctg
caaccttcaggagggacacagtccaaagtggtacccatcgccagcctcaccccttaccaa
tccaagtggactatttgtgcccgtgtcaccaacaaaagtcagatccgtacttggagcaat
tcccgaggggaagggaagcttttctctatagaacttgtagatgaaagtggtgaaatcaga
gcgactgctttcaatgaccaggtggacaagttctttccccttattgaactgaacaaggtg
tattatttctcaaagggcactctgaagatcgctaacaagcaattctcagctgttaaaaat
gactacgagatgaccttcaacaatgagacttctgtccttctctgtgaagatggccatcac
ttacccacagttcagtttgatttcacagggatcggtgacctggagagcaagtctaaagac
tcacttgtagacataatcgggatctgcaagagctatgaagattcaacaaaaatcacagta
aaatctaacaacagagaagttgctaagagaaatatctatctgatggacatgtcagggaaa
gtggtgactgcaaccctgtggggagaagacgccaacaagtttgatggttctagacagcct
gtgatggctatcaaaggagcccgggtctctgactttggtggacggagcctctctgtccta
tcgtctagcactatcattatgaatcctgacatcccagaggcctataagctccgtggatgg
ttcgactcagaaggacaagccttagatggtgtttccatctctgacctcaggagtggaggt
actgcagggagcaacaccaactggaaaactttgtatgaggctaaatcagagaacctgggc
cagggtgacaaggcggactatttcagcactgtggcgacggtggtgttccttcgcaaagag
aactgtatgtaccaggcctgccccacccaggactgcaataagaaagtgattgaccagcag
aatgggttgtaccgctgtgagaagtgtgaccgggaattccccaacttcaaatatcgaatg
atcttgtcggtaaatgttgcagactttcaagagaatcagtgggtgacatgtttccaggag
tctgcggaagctatccttgggcagaacactgcgtaccttggggaactgaaagagaagaat
gagcaggcgtttgaagaggttttccagaatgccaacttccgatcatttacattcagaatc
agggtcaagctggagacctacaatgatgaatctcgaattaaggccactgtgatggacgtg
aagcccgtggactacagagactatgccaaaaggttgatcatgaacatcaggagaaacata
tga
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integrated database retrieval system
