Phodopus roborovskii (desert hamster): 127219053
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Entry
127219053 CDS
T08852
Symbol
Polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03020
RNA polymerase
prob03420
Nucleotide excision repair
prob05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
127219053 (Polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
127219053 (Polr2a)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
127219053 (Polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prob03021
]
127219053 (Polr2a)
03400 DNA repair and recombination proteins [BR:
prob03400
]
127219053 (Polr2a)
Enzymes [BR:
prob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
127219053 (Polr2a)
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
127219053 (Polr2a)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
127219053 (Polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
127219053
NCBI-ProteinID:
XP_051036199
UniProt:
A0AAU9Z2H9
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagcga
gtgcagttcggagtcctgagtccggatgagttgaagcggatgtctgtgacagaggggggc
atcaaatacccagagacaactgagggaggtcgccccaagcttgggggactaatggatcca
agacagggggttattgagcggactggccgttgccaaacatgtgcgggtaacatgactgag
tgtcctggccactttggccacatcgaactggccaagcctgtgtttcatgtgggtttcctg
gtaaagacaatgaaagttttgcgatgtgtctgcttcttctgctccaaattgcttgtggat
tctaataacccgaagattaaggacatcctggccaaatctaagggtcagcccaagaaacgg
cttacacatgtctatgacctttgcaagggcaaaaacatctgcgaaggtggagaggagatg
gataacaagtttggtgtggagcagcctgaaggtgatgaggatctgaccaaagaaaagggt
catggtggctgtgggcggtaccagccccgcattcggcgctctggcctggagctgtacgct
gagtggaaacatgttaacgaagattctcaggagaagaagatcttgctgagtccagaacga
gtccatgaaatcttcaaacgtatctcagatgaagaatgttttgttctgggcatggagcct
cgctacgctaggcctgagtggatgattgtcacagtgttgcctgtgcctcctctctctgtg
cgacctgctgtggtgatgcagggttctgcccgcaaccaggatgatctgactcataaactg
gctgacatcgtgaagatcaacaatcagctgcggcgaaatgagcagaatggagcagctgcc
catgtcatcgcagaggatgtgaaactcctccagttccatgtggccaccatggtggacaat
gagcttcccggcttaccccgtgctatgcagaagtctggccgtcccctcaagtccttgaag
caacgattgaagggcaaggaaggacgggttcgagggaatctaatgggcaagcgagtggac
ttctcagcccgcactgtcatcactcctgaccctaacctatccattgaccaagttggtgtg
cctcgctccattgctgccaatatgacttttgcagagattgtcactcctttcaacattgac
agacttcaggaattagtacgcaggggaaacagccagtatccaggagccaagtacatcatt
cgagacaacggtgatcgaattgacttgcgtttccatcctaaaccgagtgacctacacctg
cagactggctataaggtggaacggcacatgtgtgacggggacattgttatcttcaatcgt
cagccaactttgcacaaaatgtccatgatggggcatcgggtccgcatcctcccctggtct
acttttcgcttgaatcttagtgtgacaactccatacaatgcagactttgatggggatgag
atgaatttgcatctgccacagtctctggagacccgggcagagatccaagagttggctatg
gtgcctcgaatgattgtcacccctcagagcaatcgacctgtcatgggtattgtgcaagac
acactcaccgcagtgcgcaaattcactaagagagatgtcttcctggagcggggtgaagtg
atgaacctcttaatgttcctgtccacgtgggatggcaaggtcccacagccagctatcctc
aagcccaggcccctgtggacaggcaagcagatcttctccctcatcatacctggtcacatc
aattgtatccgtacccacagcacccatcctgatgatgaagacagtggcccttacaagcac
atctcacccggagacaccaaagtggtggttgaaaatggggagcttatcatgggcatcctt
tgtaagaagtctttgggcacctcagcaggctctctggtccatatctcctacctagagatg
ggtcatgacatcactcgacttttctactccaacattcagactgtcattaacaactggctc
ctcattgagggtcataccattggcattggggactccattgctgattccaagacttaccag
gacatccagaacactattaagaaggctaaacaagatgtaatagaggtcattgaaaaggct
cataacaatgagctggaacccaccccaggaaacacattacgtcagacatttgagaatcaa
gtgaaccgcattctcaatgatgctcgagacaaaactggctcctctgcacaaaagtccctg
tctgaatacaacaacttcaagtccatggtggtgtctggagctaaaggttccaagatcaac
atctcccaggtcattgctgttgttgggcaacaaaacgtagagggcaaacggatcccattt
ggatttaagcatcgaacacttcctcactttatcaaggatgactatggtcctgagagtcga
ggctttgtagagaactcatacttagctggtctcacacccactgagttcttcttccatgcc
atgggaggacgagagggcctcatcgacacagctgttaaaactgctgaaacagggtatatt
caacgaaggctgataaaatccatggagtcagtaatggtgaaatatgatgcaactgtgcgg
aactccatcaaccaggtggtacagctgcgctatggagaggacggcctagcaggggagagc
gttgagttccagaatctggctacgcttaaaccttctaataaagcttttgagaagaagttc
cgctttgattataccaatgagagagccttgcggcgcactctacaggaggatctggtaaag
gatgtgctgagcaatgcacacatacagaatgagctggaacgggaatttgaacggatgcga
gaggatcgggaagtgctcagggtcatcttcccaactggtgacagcaaggtggtcctcccc
tgtaaccttcttcgtatgatttggaatgctcagaaaatcttccacatcaaccctcgcctc
ccctctgacctgcaccccatcaaagtggtagagggagtcaaggaattgagcaagaagttg
gtaattgtgaatggggatgacccactaagtcggcaagcccaggagaacgccacattgctc
ttcaatatccacctaagatccacactctgctctcggcgcatggctgaggagtttcggcta
agtggagaggcctttgactggctgcttggggagatagagtccaagttcaaccaagccatt
gctcatcctggagaaatggtgggagctctggctgcacagtctcttggagaacctgccact
cagatgactctgaacactttccactatgctggtgtgtctgccaagaatgtgacactgggt
gtacctcgacttaaggagctcatcaatatttccaagaaaccaaagaccccttcacttact
gtcttcctattaggccagtctgctcgagatgctgagcgggctaaggatattctatgccgc
ttggaacatacaactttgaggaaggtgactgccaacacagccatctattatgaccccaac
ccccagagcacagtggtggcagaggatcaggagtgggtgaatgtgtactatgaaatgcct
gactttgatgtggcccgaatatccccctggctgcttcgtgtagagctggaccggaagcac
atgactgaccggaagctcaccatggagcagattgctgaaaagatcaatgcaggttttggg
gatgatttgaattgcatcttcaatgatgataacgcagagaaattggtccttcgtatccga
attatgaacagcgatgaaaacaagatgcaagaggaggaagaggtggtggataaaatggat
gatgatgttttcctgcggtgtattgagtccaacatgctgacagatatgaccctgcagggt
atcgagcagattagcaaggtatacatgcacttacctcagactgacaacaaaaagaagatc
atcatcacagaggacggggagttcaaagccctgcaagaatggatcttggagactgatggt
gtgagcttgatgcgagtgcttagcgagaaagatgtggaccctgtgcgcaccacgtctaac
gatattgtggagatctttacggtgctgggcattgaggctgtgcggaaggccctggagcgg
gaactgtaccatgtcatttcctttgatggttcctatgtcaattatcggcatttggctctc
ttgtgtgacaccatgacctgtcgcggccacttgatggccatcactcgtcacggagtcaac
cgccaggacactggaccactcatgaaatgctcctttgaggaaacggtggacgtgcttatg
gaagcagctgcccatggggagagtgaccccatgaagggagtctctgagaatatcatgctg
ggacagcttgccccagctggcactggctgttttgacctcctgcttgatgctgagaagtgc
aaatacggcatggagattcccaccaatatccctggcctgggggctgctggacctactgga
atgttctttggctctgcacccagtccaatgggaggaatatctcctgcaatgacaccctgg
aaccagggtgcaaccccagcctatggtgcctggtccccaagtgttgggagtgggatgacc
cccggagcagccggcttctcgcccagtgctgcatctgatgccagtggctttagcccaggt
tattctcctgcatggtctcccacaccaggctctccaggttcccctggaccctcaagccca
tacatcccctcaccaggtggtgctatgtctcccagctactcaccaacatcacctgcatat
gagccacgctcccctgggggttatacaccccagagcccttcatactctcctacttcacct
tcctactccccaacctcaccatcttattccccaacaagtcccaactatagccctacatct
cctagctactctccaacctctcctagctactctccaacctctcctagctactcgccaacc
tctccatcttactcgccaacctctcccagctattccccaacatctcctagctactcaccg
acatcgcctagttactcaccaacttcaccaagctattccccaacatctcctagctactca
ccgacatcacctagctactcaccaacttcaccaagctattctcccacctcccccagttac
tcaccgacatctccaagctattctcctacatctccgagctactcgccaacttctccaagt
tactcacccaccagccctaactattctccaactagtcctaattataccccaacatcaccc
agctacagcccaacatcacctagctactcacctactagcccgaactacacacccaccagc
cctaactacagcccaacctctccaagctattccccaacttcacccagttattcacccacc
tcaccaagctactccccatccagcccacggtacacaccacagtctcccacctatacacca
agctctcccagctacagccccagctcaccaagctatagccccacttcacccaagtacacc
ccaactagtccttcctacagtcccagctcaccagagtacaccccaacctctcccaaatac
tcacctacaagccccaaatattcaccaacttctcccaaatattctcctaccagccccact
tactcacctaccaccccaaaatactcgccaacctctcctacgtactcaccaacctctcca
gtctacaccccaacctcccccaagtactcgcctaccagccccacctactcacccacttcc
cccaagtactcccccaccagccccacctactcacccacctcccccaaggggtccacttac
tctcccacttcccctggctactcgcctactagccccacctacagcctcaccagcccagcc
atcagccctgatgacagtgacgaggaaaactga
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integrated database retrieval system
