Phodopus roborovskii (desert hamster): 127219524
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Entry
127219524 CDS
T08852
Symbol
Ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog isoform X1
KO
K19672
intraflagellar transport protein 140
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
prob03037
]
127219524 (Ift140)
Cilium and associated proteins [BR:
prob03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
127219524 (Ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD40_Prp19
Beta-prop_EML
WDR55
Beta-prop_WDR90_POC16_2nd
TPR_IFT80_172
TPR_GEMI5
Beta-prop_CAF1B_HIR1
Clathrin
TPR_COPA_B
Beta-prop_WDR75_1st
RNase_HII
tRNA_int_end_N2
Exo84_C
WD40_MABP1-WDR62_1st
TPR_2
Motif
Other DBs
NCBI-GeneID:
127219524
NCBI-ProteinID:
XP_051037086
LinkDB
All DBs
Position
Unknown
AA seq
1462 aa
AA seq
DB search
MALYFDHRIKAPDASRSPSHITWHPTHPFLAVASLSPSCGGNVDIYLEQGEPVPDTHIER
SFCVTSLCWHPTRLILAIGWETGEVIMFNKQDKEQHTVPLPHTTDIAILSWSTSGSCLVS
GDKLGVLLLWRLDQRGRVQGTPLLKHEYGKPLTHCIFRLPPPGEDLVQLAKAAVSGDEKA
LDMFNWRKSSFGSFLKTGSQEGLSFFVSLMDGTVHYVDEKGKTAQVASTDSSIQMLFYIE
KREALVVVTQNLLLSLYVVTPEGEAEEVMKVKLSGKTGRRADIALIEGSLLVTAIGEPVL
RFWDLERGENYILSPQEKFGFEKGENINCVCFCKTKGLLAAGTNKGRVALWKKVPNSPSG
RGVEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSSVDSVSILSEQAMSSHFHQQVAAV
QISPSLVNVSFLSTGSTHSLRTDMHISGVFATKDAVAVWNGKQVAVFEPSGSTLRNAGTF
LCETSVLAMHEESIYTVEPNRIQVRTWQGTVKQLLLFSETEGNPCFLDVCGTFLVAGTDL
AHFKSFDLSRREAKVHCSSKNLAQLIPDVGNITSLRCNVNGNKISILLSKVDNNPDSKIY
IYDVEMDTVNVFNFKTGQIGQMQTLPFNEPEMNETHNFMHERIANYVPVNHFWDQSEPRL
FVCEALQEVSGAQPQAIDKQPHVEDTCHKEDVLILSFFASEEHGFLLHDCFPRPPIYQNL
LGMEVPHYYFTKKPGEAEKEDRVDSGHYHIPQMVAKRPLRDFVGLEDCDKPTRDAMLNFS
FFVTIGDMDEAFKSIKLIKSETVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREAE
REPELEARVAMLAIQLGMLEEAEQLYKKCKRYDLLNKLYQASDQWQKAVEVAEVHDRVHL
RTTYYNYAKHLEASADCGLALSYYEKSDTHRFEVPRMLSEDLQSLELYINRMKDKTLWRW
WAQYLESQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLARQY
ESQDEVKQAVHFYTRAQAFNNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGEQ
MDRAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDEKSDPALLARCSDFCIEHKQFE
KAVELLLAAKKYHEALQLCLEQNMTITEEMAEKMTVSKDSKDLSEESRRELLEQIANCCM
RQGNYHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWR
KEPEIMKNIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKAKAK
SPLDQETKLAQLQSKMTLVKRFIQARRTYTEDPKESIRQCELLLEEPDLDSTIRIGDVYG
FLVEHHVQMEEYQMAYKYLEEMRKRLPSANISYYVDQRTVDIVHQGLGLPPSRIMPERVR
HNSMEDHKDVYEEVMEEVENDP
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atggcactgtattttgaccaccgaatcaaagccccagatgcatccagatctccctcgcac
atcacctggcaccccacccacccattcctggcggtagcatccctaagcccatcttgtgga
ggcaatgtagacatctaccttgaacaaggtgagcctgtgcctgacacccacattgagagg
tccttctgtgtcacttcactgtgctggcacccaacaaggcttatcctggctattggctgg
gagactggagaagtgataatgtttaataagcaggacaaggagcagcacacagtgcccctg
ccacataccactgacattgccatcctcagttggagtaccagtgggagctgcctggtatct
ggagataagcttggggtcctgctcttgtggagactggaccagaggggccgagtacagggg
acaccactcctgaaacatgaatatgggaaaccactcacccattgcatcttccggctccct
cctcctggagaggatctagttcagttggcaaaggcagcagtaagtggtgatgaaaaagcg
ctggacatgtttaactggagaaaaagcagctttggaagtttcctgaagacggggtctcaa
gaggggctgtctttctttgtcagtctgatggatgggacagtgcactatgtggacgaaaaa
ggcaagactgcccaggtggcatccacagatagctccatccagatgcttttctacattgag
aagagagaagcactagttgtggtcacacagaacctcctcttgtctctgtatgtggtgact
cctgagggggaagctgaagaagtaatgaaggtaaagttgagtgggaaaacaggccgccgg
gcagatatcgctttgatagagggcagccttcttgtcacagccatcggagaaccagtgctc
agattctgggacttagaacgaggagagaattacatattgagtccacaggagaagtttggc
tttgaaaagggagagaatataaactgtgtttgtttctgtaaaaccaaaggtctcctggca
gctgggaccaataaagggcgagtagccttgtggaagaaagtgccaaactccccaagtggc
aggggggttgagggcaaggacatgtgggcccttcaaacacctactgagcttgaaggaaac
atcacacaaataaagtggggctccaggaagaaccttctggcagtgagcagtgttgactcc
gtgtccatcctcagtgagcaagccatgtcatcacacttccaccagcaagtagctgctgtg
cagatctccccaagcttagtcaacgtgtctttcctgtccacgggaagcacacacagcctg
cgtactgacatgcacatcagtggagtattcgccaccaaggatgctgtggctgtctggaat
ggaaaacaagtggcggtctttgaaccttccggatctaccttaagaaatgcagggacgttc
ctatgtgaaacgtcagtgttagcaatgcatgaagaaagcatttacacagtggagccaaac
cgaattcaagtacggacctggcagggaactgtcaaacaacttctgctgttctctgagact
gaggggaacccctgcttcctagacgtctgtggaactttcctggttgcagggacagactta
gctcactttaaaagttttgatctttccagaagggaagcaaaagtgcactgcagctctaag
aacctggcccaactgatccctgatgtggggaacatcacatctctgagatgcaatgtcaat
gggaacaagatcagcatcctccttagcaaggtcgacaataaccctgattccaaaatctac
atctatgatgttgaaatggacacagtgaatgtcttcaacttcaagactggtcagattgga
cagatgcagacactgccatttaatgagccagagatgaatgagacccacaactttatgcat
gagagaatagcaaattacgttcctgtgaaccatttctgggatcagagtgagcccaggctt
tttgtgtgtgaggccttgcaggaagtatctggagcccagccacaggctatagacaagcag
ccccatgtggaggacacatgccacaaggaagatgttttgattctatcattctttgcttct
gaagaacatggcttcttgctacacgactgcttcccccggcctcctatctaccagaacctt
ctgggaatggaagtgcctcactattacttcacaaaaaagcctggagaagcagagaaagaa
gacagggtggattctggacactatcacatccctcagatggtagccaagagacccctgcga
gactttgtggggctggaggactgtgacaagcctactcgggatgccatgctcaacttcagc
ttctttgtcaccattggggacatggatgaagctttcaaatctatcaaactcatcaaaagt
gagactgtctgggagaacatggcacgcatgtgtgtcaagactcagaggctggatgtcgcc
aaggtgtgcctagggaacatgggccatgcccgtggagcccgagcacttcgggaagctgag
cgggaaccagaactggaagccagagtggccatgctggccatacagctgggcatgctggag
gaggctgaacaactctacaagaaatgcaagcgctatgacctcctgaacaagctctaccag
gcctcagatcagtggcagaaagccgtggaggtagctgaggtccacgaccgtgtccacctg
cgcaccacctactacaactatgccaagcacctggaggccagtgctgactgtggcctggcc
ctcagttactacgagaagtcagacacccaccgttttgaggtacctaggatgctctcagaa
gacctgcaatcactggagctctacatcaacaggatgaaggacaagaccctgtggaggtgg
tgggcccagtaccttgagagccaggctgagatggacactgcattgcgctactacgagctg
gcacaggactacttctccctggtccggattcattgctttcagggcaacattcagaaggct
gctgaaatagccaacgagactggagattgggctgcatcctaccaccttgcccggcagtat
gagagccaggatgaggtaaaacaggcagtgcacttctacacaagggcacaggctttcaac
aatgccatccgcctatgcaaggagaatggcttagatgaccagctcatgaacttggccctg
ttgagctccccagaggacatgatcgaggcagcccgatattacgaagagaagggcgagcag
atggacagggctgtcatgctgtatcataaggctggacacttttccaaggccctggagttg
gccttcaccacccagcagtttgcagccctacaactcatagcagaggacctggatgagaag
tcagatcctgctctcctggcccgctgctcagacttctgcattgagcacaagcagtttgaa
aaggctgtggaacttcttctggctgccaagaagtatcatgaggctctgcagctgtgccta
gaacagaacatgaccatcaccgaggagatggcagagaagatgaccgtgtccaaggactcc
aaggacctgtctgaggagtcacggcgtgagctgctagagcagattgcaaactgctgtatg
cgccagggcaactatcacttggccaccaagaagtacacacaggctgggaacaagctgaaa
gccatgagagcgctgctaaaatctggagacacggagaaaattgtgttctttgcgggcgtc
tcaagacagaaggaaatctatatcatggcagccaattacctacagtccttggactggcgg
aaggagccggagatcatgaagaatattattagcttctacaccaaagggcgggccttagac
ctcctggctggcttctatgatgcctgtgcccaggtggagattgatgaataccagaactat
gacaaggctcatggggcactgactgaggcctataagtgcctgtccaaagccaaggccaag
agccccctggaccaggagacaaagctagcccagttacaaagcaagatgaccctagtgaag
aggttcatccaggcccgaaggacgtacacagaggaccctaaagagtccatcagacagtgt
gagctgctcctagaagagccagacctggacagcaccatccgaattggggacgtctatggc
ttcctggtggaacaccatgtacagatggaggaatatcaaatggcctataagtatcttgag
gagatgaggaaaagacttccttcagccaacatatcatactacgtggaccagcgcactgtg
gacattgtgcaccagggcctgggcctgccaccatctcgcatcatgcccgagcgagtccga
cacaacagcatggaggaccataaggatgtgtatgaagaggttatggaagaggtggagaat
gacccctga
DBGET
integrated database retrieval system
