Phodopus roborovskii (desert hamster): 127219658
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Entry
127219658 CDS
T08852
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04612
Antigen processing and presentation
prob05145
Toxoplasmosis
prob05152
Tuberculosis
prob05164
Influenza A
prob05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
127219658 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
127219658 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
127219658 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
127219658 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
127219658 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
prob01001
]
127219658 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
prob04054
]
127219658 (Ciita)
Enzymes [BR:
prob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
127219658 (Ciita)
Protein kinases [BR:
prob01001
]
Serine/threonine kinases: Other
TAF1 family
127219658 (Ciita)
Pattern recognition receptors [BR:
prob04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127219658 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
LRR_6
LRR_4
LRR_8
Motif
Other DBs
NCBI-GeneID:
127219658
NCBI-ProteinID:
XP_051037363
LinkDB
All DBs
Position
Unknown
AA seq
1203 aa
AA seq
DB search
MNHFQAILAQVQTLLSGQQPRQVQALLDGLLEEELLSPEYHCALLREPDVEALARKISLT
LLEKEDLGLACSSWVRSKLQALAVERATSYRDHGGHSLCATMELGFPEGSYLELLNSNAD
PLHLYHSFDHMDLPREEETELSSEPDTDTINCDQFSKLLQDIEGDEETREAYANIAELDQ
YVFQDTQLEGLSKDLFIEHIGAEEGFSESMEVPVEAGQRTQKRRSPEEHPMDLKHRKLAE
PSMVPMLTGSFLMGPASLSTMPYLPPALSNQKPVSSHIHLEGATQTSVPPSRSSLTCLDL
PIGHIQLLPTLPQGLWQISGTGTGLPSVLIYHGEMSQVNQAVPSGSPTVSSLPKCPDRPC
STSPFAPSEADLPSMPEPALTSRINEAEDTTSPSPCQEGSESSIKLPKWPESVERFQHSL
KDKYLVEPENLSCPLVAVELVRGRLERGSNKSQERELATPDWTERQLAHGGLAEVLQAVV
DRRRLRETQVVAVLGKAGQGKSHWAQMVSQAWARGQLPQYDFVFYVPCHCLYHPGDTFHL
QDLLCPPSLQPLVMDDEVLGHIVRQPHRVLLILDAFEELEAQDGLLHGPLPPEPCSFRGL
LAGLFQRKLLRGCTLLLTARPRGRLTQSLSKADAIFEVPSFSTKQAQTYMRHYFENSGTT
GDKDKALGLLEGQPFLLTHSHSPALCRAVCQLSKALLEQGTETQLPCTLTGLYVGLLGPA
IQDSPPGALAELAKLAWELGRKHQSTLQETKLLSVEVKTWAVTQGLVQPTLGTTETQLAF
SSFLLQCFLGAVWLAQCNEIRDKELPQYLALTPRKKRPYDNWLEGVPRFLTGLVFQPQAH
CLGAVVEPAVADRKRKVLTRYLKRLQLQSLRAGRLLELLHCAHETQEPGIWEHVAHQLPG
HLSFLGTRLTPPDVHMLGRALQTASQDFSLDLRQTGIEPSGLGNLVGLSCVTSFRAALSD
TMVLWESLRQQGEPQLLQAAEEKFTIEPFKAKSPKDVEDLDRLVQTQRLRNPSEDAALDL
PAIQDLKKLEFALGPVLGPQAFPTLVKILPEFSSLQHLDLDSLSENKIGDEGVLKLSATF
PQLKVLETLNLSQNSITDVGACKLAEALPALAKSLLRLRSQEPGTSASRHGVSAGDGCPV
QQVHSCRCPAAGLQPSEVSSSGNAGNVDTHYPLWGSGTLAAAGCPDQPEMTLLCPGQACA
LGH
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacttccaggccattctggctcaggtacagacactgctctccggccagcaaccc
aggcaggttcaggccctcctagatggcctgctggaagaagagctgctctcccccgaatac
cactgtgccctgctccgtgagcctgatgttgaggctctggcccgcaagatttctttgacc
ctgctggagaaagaggacttaggcttggcttgctcaagctgggtccgcagcaagctacag
gccttggcagtagagagggccaccagctacagggatcatggaggccatagtctgtgtgcc
accatggaactggggtttccagagggcagctacctggagctccttaacagcaatgctgac
cccctacacctctaccactcctttgaccatatggacctgcctagggaggaggagaccgag
ctcagctcagagccggacacagacaccatcaactgtgaccagttcagcaagctgttgcaa
gacatagaaggggatgaagagacccgggaggcctatgccaacattgcggagctggatcag
tacgtgttccaggacacccagctggagggcctcagcaaggacctcttcatagagcacatt
ggagcagaggaaggcttcagtgagagcatggaggtccctgtagaagcaggacagaggacc
cagaagagacgctccccagaagagcaccctatggacctaaagcacaggaagcttgctgaa
ccctctatggtgcccatgctgaccgggagcttcctgatggggccagcaagcctctccacc
atgccctacctaccacctgctctgtccaatcaaaagccagtgtccagccatatacaccta
gaaggagctactcagacatctgtgcccccctctaggtcctcactgacctgtttggatctc
cccattggacacatccagctccttcccactctgccccagggactttggcaaatctcaggg
actggcacagggctccccagtgttctgatctaccatggtgagatgtcccaggtcaatcag
gcagtcccttcaggcagccctactgtctccagcctccccaaatgcccagatcggccgtgc
tccaccagcccctttgcaccatctgaggctgacctgcccagcatgcccgaacctgcactg
acctcccgtataaatgaggctgaggacacaacatccccctccccatgccaagagggttcc
gagtcttccatcaagctcccaaaatggccagagtctgtggagcggttccagcactctctg
aaggacaagtacctggtggagccagagaacttgagctgtcccctggtagccgtggagctg
gtgcggggcaggttggagagaggtagcaacaagagccaggaaagagagctagccactcca
gattggacagagcgccagctagcccatggtggcctggctgaggtgcttcaggctgttgtc
gatcgccggcggctgcgagagacacaggtggttgctgtgctgggcaaggccggccaaggc
aagagccactgggcccagatggtgagtcaggcctgggcccgtggccagttgccacaatat
gactttgtcttctatgtcccttgtcactgcttgtatcatccaggggacaccttccacctg
caggatctgctctgtcccccaagcctgcagccactggtcatggatgacgaggttttaggt
cacattgtgaggcaaccacaccgggtcctgcttattctagatgcttttgaggagctggag
gcccaagatggcctcctgcatggacctctgcccccagagccctgctccttccggggactg
ctagcggggcttttccagcggaagctgctgcgtggctgtaccctgctcctcacagcccgt
ccccggggccgcctgactcagagcctgagcaaggcagatgctatctttgaggtgcccagt
ttctctactaaacaggcccagacttacatgagacattactttgaaaactcagggacaaca
ggggacaaagacaaggccctgggactcctggaaggtcaaccttttctcctcacccatagt
cacagccctgctctgtgcagggccgtgtgccagctctccaaggccctgctagaacagggc
acagagacccagctgccttgtacacttacaggactctatgtcggtctgctaggccctgca
atccaagacagtcctccgggggccttagctgagctggccaagctggcctgggagctgggc
cgtaaacaccaaagcaccttgcaagagactaagttactatcagttgaggtgaagacttgg
gcagtgacccaaggcttggtgcagcccaccctgggcaccacagagacccagctggccttc
tccagttttctgctacagtgtttcctgggtgctgtgtggctggctcagtgtaatgaaatc
agagacaaggagctgccacagtatctggccttgacaccaagaaagaagagaccctatgac
aactggctggagggtgtaccacgctttctgactggattggttttccagcctcaagcccac
tgcctgggagctgtggtggagcctgcagtggcagacagaaaacggaaggttcttaccagg
tacctgaagcgcctgcagctgcagtcgctgcgggctgggcgactgctggagctgctgcat
tgtgcccatgagacacaggaacctgggatttgggagcatgtggcccaccagctcccgggg
cacctctccttcctgggcacccggctcacaccaccagatgtgcacatgctgggcagggcc
ctgcagacggcaagccaggacttctccctagaccttcgtcagactggcattgagccctct
ggactggggaacctcgtgggactcagctgtgtcaccagtttcagggctgccttgagtgac
acaatggtgctatgggagtccctacgacagcagggagagccccagttactccaggcagca
gaggagaagttcaccattgagccattcaaggccaagtccccaaaggacgtggaagacctg
gaccgcctcgttcagacacagaggctaagaaacccctcggaggatgcagctctggatctt
cctgccatccaggaccttaagaagttagagtttgcgttgggtccggtcctgggcccccag
gctttccccacactggtaaagatccttccggaattctcgtccctgcagcacctagacctg
gactcacttagtgagaacaagatcggggatgagggtgtgttgaagctctcagcaaccttt
cctcagctcaaggtcctggaaacactaaacctgtcccagaacagcatcactgatgtgggt
gcctgcaagcttgcagaagccctgccggccctagccaagtccctcctaaggctgaggagc
caagagcctggcacaagtgcttccagacatggtgtctctgcgggtgatggatgtccagtt
caacaagttcacagctgccggtgcccagcagctggcctccagccttcagaagtgtcctca
agtggaaacgctggcaatgtggacacccactatcccctttggggttcaggaacacttgca
gcagctggatgcccggatcagcctgagatgaccctgctgtgccctggacaagcatgtgct
ctgggacactga
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integrated database retrieval system
