Phodopus roborovskii (desert hamster): 127220246
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Entry
127220246 CDS
T08852
Symbol
Col4a2
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04151
PI3K-Akt signaling pathway
prob04382
Cornified envelope formation
prob04510
Focal adhesion
prob04512
ECM-receptor interaction
prob04820
Cytoskeleton in muscle cells
prob04926
Relaxin signaling pathway
prob04933
AGE-RAGE signaling pathway in diabetic complications
prob04974
Protein digestion and absorption
prob05146
Amoebiasis
prob05165
Human papillomavirus infection
prob05200
Pathways in cancer
prob05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
127220246 (Col4a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127220246 (Col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127220246 (Col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127220246 (Col4a2)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
127220246 (Col4a2)
09154 Digestive system
04974 Protein digestion and absorption
127220246 (Col4a2)
09158 Development and regeneration
04382 Cornified envelope formation
127220246 (Col4a2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
127220246 (Col4a2)
09162 Cancer: specific types
05222 Small cell lung cancer
127220246 (Col4a2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
127220246 (Col4a2)
09174 Infectious disease: parasitic
05146 Amoebiasis
127220246 (Col4a2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
127220246 (Col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
prob04147
]
127220246 (Col4a2)
00536 Glycosaminoglycan binding proteins [BR:
prob00536
]
127220246 (Col4a2)
Exosome [BR:
prob04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127220246 (Col4a2)
Glycosaminoglycan binding proteins [BR:
prob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127220246 (Col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127220246
NCBI-ProteinID:
XP_051037932
LinkDB
All DBs
Position
Unknown
AA seq
1707 aa
AA seq
DB search
MDLVKFSASGPTLRGWLLLATVTVGLLAQSVLAGVKKLDVPCGGRDCSGGCQCYPEKGAR
GQPGVVGTQGYTGPPGLQGFPGLQGRKGDKGERGAPGPTGPKGDVGARGVSGFPGADGIP
GHPGQGGPRGRPGYDGCNGTRGDAGPQGPSGSGGVPGPQGPQGPKGQKGEPYALPKGVQE
KYRGEPGEPGQDGYQGPPGRPGLIGQMGPMGAPGRPGPPGPPGPKGQPGNRGLGFYGEKG
EKGDVGQPGPNGIPSDITLIGPTTTTYHPDLYKGEKGSRGDQGIPGTSRKGEEGIMGFPG
IRGHPGLDGEKGVFGQKGIKGLDGFQGPSGPRGPKGERGQQGPPGPPVYSPHPSLAKGAR
GDPGFPGAHGEPGSRGEPGDPGPMGPPGLSIGDEDTKRGLPGEMGPKGFSGEPGLSARYP
GPPGADGKPGLQGVPGPAGPPGPDGFLFGLKGSEGRVGYPGPSGFPGARGQKGWKGEAGD
CQCGQFIGGLPGLPGPKGSPGVNGELGKKGDQGDPGLHGIPGFPGFKGAPGITGVPGPKG
IKGDSRTVTTKGERGQPGVPGVHGMKGDDGVAGRDGLDGFPGLPGPPGDGIKGPPGDAGP
PGEPGTKGFPGEVGPPGQGLPGPKGERGFPGDPGFPGSPGFPGPPGPPGTPGQIDCDTGV
KRPVGDGQQVIIQPGCGGGPKGSPGQPGPPGPTGVKGIRGIPGFSGETGAPGLKGFPGDP
GREGFPGPPGFMGPRGSKGATGLPGTDGLPGPIGLPGPAGPPGDRGIPGEVLGAQPGPRG
DAGLPGHPGLKGPPGERGSPGIRGSQGMPGIPGLKGQPGFPGPSGQPGLSGPPGQHGFPG
APGREGPLGLPGSPGLGGLPGDRGEPGEPGVPGPVGMKGLSGDRGDAGMSGERGHPGSPG
FKGMAGMPGIPGQKGNRGSPGMDGFQGMLGLKGRPGFPGVKGEAGFFGVPGLKGLPGEPG
VKGNRGDRGPPGPPPVILPGMKDIKGEKGDEGPMGLKGYLGLKGIQGMPGVPGLSGIPGL
PGRPGYIKGVKGDIGVPGTPGSPGQPGVVGTPGITGFPGFIGSRGEKGEPGRAGLFGEIG
LTGDFGDIGDTVDLPGSPGLKGERGVTGIPGLKGSFGEKGAEGEVGFPGITGMAGPQGSP
GLRGQTGFPGLTGLQGPQGDPGRSGIPGDKGDYGWPGVSGLPGFPGIRGISGLHGLPGTK
GFPGSPGADVHGDPGFPGPVGDRGDRGEANTLPGPVGAAGQKGERGSPGERGPAGSPGLQ
GFPGISPPSNISGSPGDVGVPGIFGSEGYRGPPGPPGPNALPGIKGDEGSSGASGFPGQK
GWVGDPGPQGQPGVVGLPGEKGSKGAQGFMGNTGPSGAVGDRGPKGPKGDQGFPGAPGSM
GSPGIPGIPQKIATQPGTMGPQGRRGLPGAQGEMGPQGPPGDPGFRGAPGKAGPQGRGGV
SAVPGFRGDQGPMGQQGPIGQEGEPGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQEPMCP
VGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKSY
WLSTTAPLPMMPVAEEEIKPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYSF
LMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYFANKYSFWLTTIPEQSFQ
GTPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atggacctagtgaagttctcagcatctggccctaccctgcgagggtggctgctgttggcg
actgtgacagtgggactcctggctcagagcgtcttggcgggtgtgaagaagttggatgtg
ccctgcggagggagagactgcagtggtggctgccagtgctaccccgagaaaggagcacgg
ggccagccgggggtagtgggcacccaggggtacactggtcccccagggttgcaaggcttc
ccagggctacagggccgcaaaggagacaagggcgaacggggagctcctggaccaactgga
ccaaaaggagatgtgggagccagaggcgtctctggattccccggcgcagatggaattcct
ggacacccagggcaaggtgggccccgaggaaggcccggctatgatggctgcaatgggact
agaggagacgcaggtccacaagggccctctggatctgggggcgtccctgggccccagggg
ccccaaggacccaaggggcagaaaggtgaaccttatgcactgcctaaaggagtccaagag
aaatacaggggtgaacctggagagcctggacaggacggctaccaggggcctcctggccgc
ccggggctgataggacagatgggtcccatgggagctcctggaagaccgggaccaccagga
ccccctggacccaaaggacaaccaggcaaccgaggacttggcttttacggagagaagggt
gaaaagggtgatgtgggacagccaggacccaatgggatcccatctgatatcactcttatt
gggcccacaacaacaacataccatccggatctgtacaagggtgaaaaggggagcagagga
gaccaaggaataccaggcacctcccggaaaggcgaggaaggcatcatgggattcccagga
atacggggtcatcctggccttgatggagaaaaaggagtctttggacagaaaggaatcaaa
ggcctggatggtttccaaggccccagtggaccccgaggacccaagggagaacgtggacaa
caagggcccccaggaccccctgtctactcgccccatccatccctggcaaaaggtgccaga
ggtgacccaggattcccaggtgcacatggagagccaggaagccgaggcgagccaggagac
cctggccccatgggacccccaggcctgtctattggagatgaagatacaaagagaggcctt
ccaggagagatgggacccaaaggcttttcaggagaaccgggtctctcagcacgctatcca
ggtccaccaggagctgatggaaaaccaggtctccaaggagtccctggacctgcaggccca
cctgggccagatggcttcctgtttggcctgaaaggatcagaaggaagagtgggttaccca
gggccttccggtttcccaggggctcgagggcagaaaggatggaaaggtgaagccggagac
tgccaatgtggccagttcatcgggggtcttccaggattgccaggacccaagggttctcct
ggtgtcaatggggagctgggaaagaaaggggaccaaggagacccaggcctgcacggtatc
cctgggttcccaggattcaagggagccccaggcatcactggagttcctggacccaagggg
ataaagggagactccagaacagtcacaaccaaaggtgagcgaggacagccaggtgttcca
ggtgtacatgggatgaaaggtgatgacggtgtcgcaggccgtgatgggctggatggattc
cctggccttcctggtcctccgggtgatggcatcaaaggccctccaggagatgcaggtccc
cctggtgaacccggaaccaagggcttcccaggagaagtgggtcctccaggacagggctta
ccaggcccgaaaggcgagcgtggtttccctggagaccctggattcccagggtctccaggc
ttccctggtcctccaggtcccccaggaaccccaggacagatagattgtgacacaggtgtg
aaaaggcctgtcggagatggccagcaagtcatcattcagccaggttgtggtggaggtccc
aaaggatcacctggccagccaggacccccaggccccacaggtgtcaaaggcatcagagga
ataccaggattctcaggagagactggtgcaccagggctcaagggctttcctggagaccca
ggtcgtgaaggtttcccaggacccccagggttcatgggaccccgaggatccaaaggtgct
acaggcctccctggcacagatggactcccaggccccattggacttccaggaccagctgga
ccccctggagaccgagggattccaggagaagtcctaggggcccaacctgggccccgggga
gatgcaggactaccaggacacccagggctaaaaggacctccaggagaaagaggatcccct
ggaatcagaggaagccaagggatgcccggaattccagggcttaagggtcagccaggcttc
ccagggccttcaggacagccaggactatctggacccccaggacaacatggattcccagga
gctcctgggcgagaggggcccttggggctgccaggctcccccggccttggaggtttgcct
ggagacagaggtgaacctggtgagcctggtgttcctggccctgtgggcatgaaaggtcta
tctggggacagaggtgatgccggcatgtcaggcgagcgtggtcatcctggaagccctgga
tttaaaggaatggcagggatgcctggcatccctgggcaaaaaggcaatcgagggtcacct
ggaatggatggcttccagggcatgttgggactcaaaggaagaccagggttccctggagtc
aaaggagaggcaggattctttggagtacctggtctgaagggcctgcctggcgaaccaggt
gttaaaggaaaccgaggggaccgggggcctccaggaccgcctcctgtcatcctgccaggg
atgaaggacattaaaggagagaagggagatgaagggccaatgggcctgaaaggctacctg
ggcttgaaaggtatccaaggaatgccaggggtcccagggttgtctgggatccctgggcta
cctggaaggcctggctacatcaagggagtcaagggtgacatcggggtccctggcacaccg
ggctcaccaggacagccaggggtggttggcactcctggaattaccgggttcccaggattc
ataggaagccggggtgaaaagggtgagccaggaagagcagggctttttggagagattggc
cttactggggactttggtgatattggggatactgtggacctaccaggaagccccggcctg
aagggggaacggggagtcaccggaattccaggtctcaagggaagctttggagaaaaagga
gccgagggtgaagttggatttcctgggataacaggcatggccggaccccagggctctcct
ggacttagaggacagacaggttttccagggctcacaggtctgcaagggccacagggagac
ccgggacggagcggaatacccggtgacaagggagattacggctggccaggggtatcaggg
ttaccaggttttccaggaatacggggtatcagtggattacacggcctgccaggcaccaaa
ggcttccccggatccccaggtgctgatgtccatggagaccccgggttcccaggcccggtt
ggagacaggggtgaccgaggagaagccaacacacttccaggccctgtgggagctgcaggg
cagaaaggggagcggggaagcccaggggagcgtggcccagcaggaagcccaggacttcag
ggtttcccaggcatctctccaccatccaacatctctgggtcacctggtgatgtaggggtg
ccaggaatatttggctcggaaggctaccgaggccctccaggaccacctgggccaaatgca
cttcctggaatcaaaggagatgaggggagctctggagcttcagggttccctggacagaaa
ggatgggttggggacccagggccccagggccagcctggtgtagttggtcttccaggggag
aaagggtccaagggtgcgcaaggattcatgggcaacaccgggccctctggggccgtgggt
gatagaggaccgaaaggacccaaaggagaccaaggattcccaggtgctcctggctccatg
ggatccccaggcattccaggcattccccagaagattgccacccagcctgggaccatgggt
ccccagggcaggagaggccttcccggtgcacagggagagatgggacctcagggccctcct
ggagatccaggtttccgtggggctccaggcaaggctgggccccaggggagaggaggcgtg
tctgctgttccagggttccggggagaccaagggcccatgggacagcagggcccaattggc
caggaaggggaaccaggccgtccagggagcccaggtctgccagggatgcccggccgcagc
gtcagcattggctacctcttggtgaaacacagccagacagaccaggaacccatgtgtccc
gtgggcatgaacaagctctggagtgggtacagcctgctgtacttcgagggccaggagaaa
gcccacaaccaggacctagggctggcaggctcctgtctggctcgcttcagcactatgccg
tttctgtactgcaatcctggtgatgtctgctactatgccagccgcaatgacaagtcctac
tggctctccaccaccgctccactgcccatgatgcctgtggctgaggaagaaatcaagccc
tacatcagccgctgctctgtgtgtgaagccccggctgtggccatcgctgtccacagccaa
gacgtctctatcccccactgcccagccgggtggcggagcttgtggatcggatattccttc
ctcatgcacaccgcagctggggatgaaggtggcggccagtcgctggtgtcgcccggtagc
tgtctggaggacttccgggcaacacctttcatcgagtgtaacggaggccgtggaacctgc
cactacttcgctaacaagtacagcttttggctgaccacaatccctgagcagagtttccag
ggcacaccatccgccgacacactcaaggccggcctcatccgcacgcatattagccgctgc
caagtgtgcatgaagaacctgtag
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integrated database retrieval system
