Phodopus roborovskii (desert hamster): 127220247 Help Entry 127220247         CDS       T08852                                  Symbol Col4a1 Name (RefSeq) collagen alpha-1(IV) chain   KO K06237   collagen type IV alpha Organism prob  Phodopus roborovskii (desert hamster) Pathway prob04151   PI3K-Akt signaling pathway prob04510   Focal adhesion prob04512   ECM-receptor interaction prob04820   Cytoskeleton in muscle cells prob04926   Relaxin signaling pathway prob04933   AGE-RAGE signaling pathway in diabetic complications prob04974   Protein digestion and absorption prob05146   Amoebiasis prob05165   Human papillomavirus infection prob05200   Pathways in cancer prob05222   Small cell lung cancer Brite KEGG Orthology (KO) [BR:prob00001]  09130 Environmental Information Processing   09132 Signal transduction    04151 PI3K-Akt signaling pathway     127220247 (Col4a1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     127220247 (Col4a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     127220247 (Col4a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     127220247 (Col4a1)  09150 Organismal Systems   09152 Endocrine system    04926 Relaxin signaling pathway     127220247 (Col4a1)   09154 Digestive system    04974 Protein digestion and absorption     127220247 (Col4a1)  09160 Human Diseases   09161 Cancer: overview    05200 Pathways in cancer     127220247 (Col4a1)   09162 Cancer: specific types    05222 Small cell lung cancer     127220247 (Col4a1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     127220247 (Col4a1)   09174 Infectious disease: parasitic    05146 Amoebiasis     127220247 (Col4a1)   09167 Endocrine and metabolic disease    04933 AGE-RAGE signaling pathway in diabetic complications     127220247 (Col4a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:prob04147]     127220247 (Col4a1)    00536 Glycosaminoglycan binding proteins [BR:prob00536]     127220247 (Col4a1) Exosome [BR:prob04147]  Exosomal proteins   Exosomal proteins of other cancer cells    127220247 (Col4a1) Glycosaminoglycan binding proteins [BR:prob00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    127220247 (Col4a1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  127220247 NCBI-ProteinID:  XP_051037933 LinkDB All DBs Position Unknown AA seq 1669 aa AA seqDB search MGPRFSIWLLLLLGALLLHEERSRAAAKGDCGGSGCGKCDCHGVKGQKGERGFPGLQGVI GFPGMQGPEGPHGPPGQKGDTGEPGLPGTKGTRGPPGIAGYPGNPGLPGIPGQDGPPGPP GIPGCNGTKGERGPVGPPGLPGLSGDPGPKGSPGIKGDPGEILGYIPGIPLKGERGFPGS PGMPGLPGMPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGSSFQGPKGDKGEQGVSGPP GVPGQAQVKEKGDFAPTGEKGQKGEPGFQGIPGLGEKGEPGKPGPRGKPGKDGEKGEKGS PGFPGDSGYPGLPGRPGPQGEKGEAGLPGPPGSVIGTMPLGEKGERGYPGAPGFKGEPGP KGYPGIQGQPGLPGFSVPGQTGAPGVPGERGAKGDQGPPGVSLPGPSGRDGAPGPPGPPG PPGQPGHTNGIVECQPGPPGDQGPPGTPGQTGLTGEVGEKGQKGEGCLACDTEGLRGPPG PQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIFFDMRLK GDKGDPGFPGQPGMPGRAGAPGRDGHPGLPGPKGSPGLIGLKGERGPPGGVGFPGSRGDI GPPGPPGIGSIGPIGEKGHSGFPGSPGSPGLPGPKGEAGKVVPLPGPPGAAGLPGSPGFP GPQGDRGFPGTPGRPGIPGEKGAVGQPGIGFPGPPGPKGVDGLPGDVGLPGSPGRPGFNG LPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGNIGGPGFPGETGMVGPPGLQGI RGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG PKGDKGSQGLPGLTGQSGLPGLPGQQGTPGLPGFPGVKGEMGVMGTPGQPGSPGPAGTPG LPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIG PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGAPGLPGPKGSIGGMGMPG LPGQKGVPGIPGQQGVPGLRGEKGAKGEKGQSGLPGIGIPGRPGDKGDQGLTGFPGSPGE KGEKGSAGTPGMPGSPGPKGSPGIIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEVGLPGT PGPIGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGSKGDKGSKGEVGFPGLAGSP GIPGAKGEQGFMGPPGPQGQPGLPGTPGHPVEGPKGDRGPQGQPGLPGHPGPMGPPGFPG IDGPKGDKGNPGWPGAPGAPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGQKG LPGLQGVKGDQGDQGLPGPKGLQGPPGPPGPYDVIKGDPGLPGPEGPPGLKGLQGPPGPK GQQGVTGSVGLPGPPGVPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP SVDHGFLVTRHSQTTDDPLCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGDNIRPFISRCAVCEAPAMVMAV HSQTIQIPQCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT NT seq 5010 nt NT seq  +upstreamnt  +downstreamnt atggggccccggttcagcatctggcttctactgctgctgggcgcccttctgctccacgag gagcgcagccgggccgctgcgaagggtgactgtggtggctctggctgtggaaaatgtgac tgtcatggcgtgaagggacagaagggggagagaggctttccaggattacaaggtgttatt gggtttcctgggatgcaaggacctgaggggccacatggaccaccaggacaaaagggtgat actggagaacctggacttcctggtacaaaagggacaagaggaccccctggaatagctggc taccctgggaaccccggacttcctggtattcctggccaagatggtcccccaggtccccca ggtatcccaggatgcaacggtacgaagggcgagagagggccagtcggtcctcctggcttg cctggactcagcggggatcctggaccaaaagggtcaccaggaataaagggagatcctggt gaaattctcggctacattcctggaataccgttaaaaggggagcgaggattccctggttcc cctgggatgccgggcttaccagggatgccaggactccagggacctgttggtcctccagga ttcactgggccaccgggtcccccaggccctcctggccctcctggagaaaaggggcagatg ggctccagcttccaaggaccaaaaggtgacaagggtgagcagggggtcagtggcccccct ggagtacctggacaggcacaagttaaggaaaaaggagactttgccccaacaggcgaaaag ggtcagaaaggtgaacctggatttcagggaattccagggcttggagagaaaggtgaacca ggcaagccaggacctcggggaaagcctggaaaagatggcgagaaaggagaaaaggggagt ccgggcttccctggtgattccgggtacccaggactcccaggccggccaggccctcaggga gagaagggtgaagctggacttcctggcccccccgggtctgtgataggcaccatgccactg ggagagaaaggagagcgaggctaccctggagccccagggtttaaaggagagccaggccct aaaggttaccctggaatccaaggccagccaggccttccaggcttctctgttccaggccag actggtgcccctggtgtcccaggcgaaagaggagcaaagggtgaccagggacctccaggc gtgtctctaccaggaccaagcggaagagatggagctcctgggcctcctgggcctcctgga ccccctgggcagccaggtcacacaaatggcattgtggagtgtcagcctggaccacctggg gaccagggtcctccgggaactccaggacagacgggtttgacaggagaagttggagagaaa ggtcagaaaggagaaggctgccttgcttgtgacacagaaggactccgaggtcctcctggg ccacagggcccccctggagagattggtttccccggacagccaggggccaaaggtgaccga ggcctgcctggcagggatggtcttgaaggattgccaggtccacaaggtgcacctggtctc atgggccagcctggagctaagggagagcctggagagatattttttgacatgcgactcaaa ggtgacaaaggagacccaggctttccaggacagccaggcatgccaggaagagctggagcc cctggaagagatggccacccaggacttcctggacccaaaggctccccgggtttgatagga ttgaaaggagaacgaggtcctcctggcggagttggcttccccggtagtcgtggtgacatc ggcccccctgggccaccaggaatcggttccattggtcctattggtgaaaaaggacactca ggctttcctggaagccctggatccccaggccttccaggtccaaagggtgaagcagggaag gttgtcccactcccagggccccctggggctgcaggccttccaggatctcctgggttccca gggccacaaggtgaccgaggcttcccaggaaccccaggacggccaggcatcccgggagag aagggtgctgtgggccagccagggattggatttcccggacctcctggccccaaaggtgtt gacggcttacctggagatgtgggactacctgggagtccaggtcgccctggatttaatggt ttacctggcaacccaggaccacaaggccaaaagggagaacctggcattggactaccagga ctcaaagggcagccaggccttccaggcattcctggtacacccggagagaagggcaacatc gggggaccaggttttcctggagagaccggaatggttggcccccctggactccaggggatc agaggtgacccgggacctcctggagttcaaggccctgcaggtccaccaggggttccagga ataggaccacccggagccatgggccctcccggagggcaaggaccaccagggtcatcaggt ccacctggagtcaaaggagagaagggtttccctggattcccaggactggacatgcccggc cccaaaggagataaaggctctcaaggacttcctggcctcacaggacagtcagggctccct ggccttcctggacagcaggggactcctggacttccagggttcccaggtgttaaaggagaa atgggtgtcatgggaacaccagggcaaccaggctcaccaggaccagcaggcaccccaggg ttaccgggagaaaaaggggaccatggccttccaggctcctcaggacccaggggagaccct ggcttcaaaggtgataaaggggatgttgggcttcctggcatgccaggatctatggagcac gtggacatgggcagcatgaagggacagaaaggagaccaaggagagaaaggacaaattgga cccaccggtgataaaggttcccgaggagatcccggaacaccaggagtccctgggaaggat ggtcaagcagggcaccctggacagccaggacctaaaggtgacccaggtcttagtggaaca ccgggagcccctggactccccggacccaaagggtcaattggaggaatgggcatgccaggt ttacctggacaaaaaggtgtgcctggcatccctggccaacagggtgtccctggcttaaga ggagagaaaggagcaaaaggagagaaaggacagtcaggtctacctggcattggaattcct gggcggcctggcgacaagggagaccaagggcttacaggtttccccggcagccctggcgag aagggagagaaaggcagtgctggaactccagggatgccagggtccccaggcccaaagggg tctccagggatcatcggccatccaggaagcccaggcctgcctggagagaagggagacaaa ggcctcccaggactggacggcgttcccggtgtcaaaggagaagtgggtctccctgggact cctggccccataggcccagctggccagaagggagagcctggcagcgacggaatcccaggg tcggcaggagagaagggtgaaccaggtcttccaggaagaggcttcccaggctttccaggg agcaaaggagacaaaggttccaagggtgaagtgggcttccctggcttagctgggagccca ggaattcctggagccaaaggagagcaaggattcatgggtcctccgggccctcaaggtcaa cccggcttgcctggcactcctggtcatcctgtagaggggcccaaaggagaccgaggacct cagggtcaacccggcctgccagggcatccgggacctatggggcctccagggttccctgga atcgatgggccaaaaggtgacaagggaaatccaggttggccaggagctcctggggctcca ggccctaagggagacccaggattccaaggcatgccgggcattggcggctctccagggatc acaggttcaaagggagatatgggaccaccaggagttccaggattccaaggtcagaaaggt cttcctggcctacagggagtgaaaggagaccagggagatcaaggcttaccaggccctaaa ggtcttcaaggccccccaggtcccccaggtccatatgatgtcatcaaaggagacccaggg ctccctggtccagagggtccccctggtctaaaaggactccagggaccaccaggtccaaaa ggacagcaaggtgtgacaggctcagtgggcctgcctggacctccaggtgtccctgggttt gatggtgcccctggccagaaaggagagaccggaccctttggaccacccggtccaagaggg tttcctggcccaccaggccctgatggtcttccaggatccatgggtcccccaggtacccca tctgtggaccatggcttccttgtgaccaggcatagtcagacaacagatgatccgctgtgt cctccagggaccaaaattctctaccatgggtactccctgctctacgtgcaaggcaatgag cgggcccacgggcaggacttgggcacggctggcagctgtctgcgcaagttcagcaccatg cccttcctcttctgcaacatcaacaatgtgtgcaacttcgcctccaggaacgactactcc tactggctgtccacgccagagcccatgcccatgtccatggcgcccatctccggggacaac atccggcccttcattagcaggtgtgcagtgtgtgaagcacccgccatggtgatggccgtg cacagtcaaaccattcagatcccgcagtgccccaacggttggtcctcactgtggattggc tactccttcgtgatgcataccagcgctggagctgaaggttctggtcaagcccttgcatcc cccgggtcctgtctagaagagttcagaagtgccccgttcatcgagtgccacggccgagga acatgcaactactacgcaaatgcttacagcttttggctcgccaccatagagagaagcgag atgttcaagaagcccacgccatccaccttgaaagcaggagagcttcgcacgcacgtcagc cgttgccaagtgtgcatgagaagaacataa

DBGET integrated database retrieval system