Phodopus roborovskii (desert hamster): 127220289
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Entry
127220289 CDS
T08852
Symbol
Upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03013
Nucleocytoplasmic transport
prob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127220289 (Upf3a)
03015 mRNA surveillance pathway
127220289 (Upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127220289 (Upf3a)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127220289 (Upf3a)
mRNA cycle factors
P-body specific factors
127220289 (Upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
127220289
NCBI-ProteinID:
XP_051038008
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MRSEEGVGGLGTALSARGPSRREKLSAPEVPLRRESPRRDSAVAPVPSFSDSGAGKPREE
KRTALSKVVLRRLPPGLTKEQLEEQLRPLPAHDYFEVVAADFSLYPHLYSRAYINFRNPD
DILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFLE
TYSLEEEKTSASPETLLGEIEVKTRELLARRTTPLLEYIKNRKLEKQRIREEKREERRRR
EMEKKRLREEEKRKRREEESCKRKEADRQKRAEKEVKIKLLKKLETEEATSEKSKERGDS
VGIGDEKQRAWPVEGLLEMPAERLQDGSDKEQRDKRFREKEPETPRCHPDGCRKHSIHSE
FARFSRRNEDEPKWGKGFTQGTGKKGSQDGSVPMDKAERRSKEQKEYDSLGLRKERPGNK
VLTAV
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggaagagggcgtcggaggcctgggcacggccctgtctgcgcggggccccagc
aggagagagaagctgtcggccccggaggtcccgctccgccgcgagtcgccgcggagggac
agcgcggtggccccagtcccgtccttcagtgacagcggggcgggcaagcctcgcgaggag
aagaggacggccctgagcaaggtggtcctccggcggctgccaccaggcctcaccaaagag
cagctggaagagcaactgcgccccctgcctgcgcacgattacttcgaggtggtagctgcg
gacttcagtctctatcctcatctctactcaagagcatacatcaattttcggaaccctgat
gacatccttctgttcagagaccgctttgatggatatatcttcatcggcaataaagggctg
gagtaccctgccgtggtggagtttgctccattccagaagatcgccaaaaagaagctgaag
aaaaaagatgccaagaccgggagcatcgaagatgatccagaatataaacagtttctggaa
acatacagtctggaggaagagaaaaccagtgctagtcctgagacacttctgggagagata
gaagtgaagacaagagaactccttgccagaagaaccacacctctcttggaatatataaaa
aacaggaaactagaaaaacagagaattcgagaagaaaagcgtgaagagcggaggaggagg
gagatggagaagaagcgcttacgggaagaagaaaagaggaaaaggagagaagaggagagc
tgcaaacggaaagaggccgatagacagaagagagctgagaaggaagtgaagattaagctt
cttaaaaagctggaaacagaagaagcaacctcagagaaatccaaagaaagaggtgactca
gttggtattggagatgaaaagcagcgagcttggccagtggaaggcctgctggagatgcct
gccgagaggttacaggatggcagtgataaagagcaaagggacaaaagatttcgagagaaa
gaacctgagactccaagatgtcacccagatggttgcaggaagcacagcattcactctgag
tttgccaggttttccagaaggaatgaagacgaacccaagtgggggaaaggcttcacccag
ggtacagggaaaaaagggagccaggatgggagtgtccctatggacaaggcagaaagaagg
agcaaggagcagaaggagtatgacagcctgggactgagaaaggaacgcccaggaaacaag
gttttgacagctgtctaa
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