KEGG   Phodopus roborovskii (desert hamster): 127220334
Entry
127220334         CDS       T08852                                 
Symbol
Alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
prob  Phodopus roborovskii (desert hamster)
Pathway
prob03013  Nucleocytoplasmic transport
prob03015  mRNA surveillance pathway
prob03040  Spliceosome
prob05014  Amyotrophic lateral sclerosis
prob05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:prob00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127220334 (Alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    127220334 (Alyref)
   03015 mRNA surveillance pathway
    127220334 (Alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    127220334 (Alyref)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    127220334 (Alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:prob03019]
    127220334 (Alyref)
   03041 Spliceosome [BR:prob03041]
    127220334 (Alyref)
Messenger RNA biogenesis [BR:prob03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     127220334 (Alyref)
    TREX complex
     127220334 (Alyref)
Spliceosome [BR:prob03041]
 Complex C
  Other components
   EJC/TREX
    127220334 (Alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    127220334 (Alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication F07F6_N
Other DBs
NCBI-GeneID: 127220334
NCBI-ProteinID: XP_051038083
UniProt: A0AAU9YN26
LinkDB
Position
Unknown
AA seq 257 aa
MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAAARVNRGGGPLRNRP
AISRGAAGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDA
DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL
VTSQIDTQRRPAQSINRGGMTRNRGSGSFGGGGTRRGTRGGSRGRGRGTGRNSKQQQLSA
EELDAQLDAYNARMDTS
NT seq 774 nt   +upstreamnt  +downstreamnt
atggccgacaaaatggacatgtccctggacgacatcattaagctgaaccggagccagcga
ggcggccgcggcggaggccggggccgcggcagggccggctcccagggcggccgcggcggt
gcggtgcaggccgccgccgcgcgggtgaaccgaggcggcgggcctctgaggaaccggccc
gccatctctcgcggcgctgcaggcggcggcaggaaccggccggcaccgtacagcaggccg
aagcagcttccagacaagtggcagcacgatctgttcgacagcggcttcgggggtggagcc
ggcgtggagacgggaggaaagctgctggtgtcaaaccttgacttcggggtgtcagacgcc
gatattcaggagctcttcgctgagtttggaacgctgaagaaggcagctgtgcactacgac
cgctctggacgaagtttagggacagcagatgtgcactttgaacgcaaggcagacgcccta
aaggccatgaaacagtacaacggtgtccccttggatggccgtcccatgaacatccagcta
gtcacatcacaaatcgatacgcaaagaagacctgcacagagcataaacagaggtggcatg
acaagaaaccgtggctctggaagttttggtggtggtggcacccggagagggacccgtgga
ggcagccgtggaagaggtagaggtaccggaagaaactcaaagcagcagcagctttctgcg
gaggagttggatgcgcagctggatgcatataatgcaaggatggacaccagttaa

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