Phodopus roborovskii (desert hamster): 127220999
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Entry
127220999 CDS
T08852
Symbol
Ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03420
Nucleotide excision repair
prob04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127220999 (Ercc8)
09124 Replication and repair
03420 Nucleotide excision repair
127220999 (Ercc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
prob04121
]
127220999 (Ercc8)
03400 DNA repair and recombination proteins [BR:
prob03400
]
127220999 (Ercc8)
Ubiquitin system [BR:
prob04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
127220999 (Ercc8)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
127220999 (Ercc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
WD_LRWD1
Beta-prop_EML
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
WD40_RFWD3
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_Nup120_160
Beta-prop_WDR11_1st
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
127220999
NCBI-ProteinID:
XP_051038860
LinkDB
All DBs
Position
Unknown
AA seq
397 aa
AA seq
DB search
MLSFLSARQSGVEDPLRLRRAQSTRRVLALELNKDRDVERIHGSGVNTLDIEPVEGRYML
SGGSDGVIVLYDLENSSRQPYYTCKAVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSSSF
DKTLKVWDTNTLQAADVFTFEETIYSHHMSPAATKHCLVAVGTRGPKVQLCDLKSGSCSH
ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLLTLDQHNGKKSQAVESA
NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSSGENTLVNYGKVCNDSRKGLKFTVS
CGCSSEFAFVPYGSTIAVYAVYSGEHLTMLKGHYKSVDCCVFQSNFQELYSGSRDCNILA
WVPSLYEPVPDDDDEATTKSQLNPAFEDAWSSSDEEG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgctgagctttctgtccgctcggcagtcgggtgtggaggaccctctgcggctgcggaga
gcgcagtccacgcggagggtcctggcactggagttaaacaaagacagagatgttgaaaga
atccacggcagtggagttaacactcttgatattgagcctgttgaaggaagatacatgtta
tcgggtggttcagatggtgtgattgtactctatgaccttgagaactccagcagacaaccc
tattacacatgtaaagcagtgtgttccgttggcagaagccaccctgatgtccacaaatac
agcgtggagactgttcagtggtaccctcatgacacaggcatgttcacatccagctcattc
gataaaactctaaaagtgtgggatacaaacacattgcaggctgctgatgtgtttactttt
gaagaaacgatttatagtcatcacatgtccccagcagccaccaagcactgtctggtagca
gttggtactagaggacccaaggtacaactttgtgacttaaagtctggatcctgttctcac
attctccagggtcacagacaggaaatactagcagtttcctggtcaccacgctatgactat
atattggcaacagccagtgctgacagtagagtaaaattatgggatgtgagaagagcatca
ggatgtttgctcactcttgatcagcataatgggaagaagtcacaggctgttgagtcagca
aatactgctcacaatgggaaagttaatggcttatgttttacaagtgatggacttcacctg
ctcacagttggcacagacaaccgcatgaggctctggaacagctccagtggggagaacaca
ctggtgaactatgggaaagtttgtaatgacagtaggaaaggactgaaattcacggtctcc
tgtggctgcagctcagaattcgcttttgttccgtatggtagcaccatcgcagtctatgca
gtttactcaggagaacatctaactatgcttaagggacattataaaagtgttgactgctgt
gtgtttcagtctaatttccaggagctttacagcggtagcagggactgtaatattctggct
tgggtaccatctttgtatgaaccagttcctgatgatgatgatgaagctacaactaagtcc
cagttgaatccagcgtttgaggatgcctggagcagcagtgatgaggagggctga
DBGET
integrated database retrieval system
