Phodopus roborovskii (desert hamster): 127221155
Help
Entry
127221155 CDS
T08852
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127221155 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127221155 (Mtrex)
03041 Spliceosome [BR:
prob03041
]
127221155 (Mtrex)
03009 Ribosome biogenesis [BR:
prob03009
]
127221155 (Mtrex)
03016 Transfer RNA biogenesis [BR:
prob03016
]
127221155 (Mtrex)
Enzymes [BR:
prob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127221155 (Mtrex)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
127221155 (Mtrex)
Spliceosome [BR:
prob03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127221155 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
127221155 (Mtrex)
Ribosome biogenesis [BR:
prob03009
]
Eukaryotic type
Pre-60S particles
Helicases
127221155 (Mtrex)
Transfer RNA biogenesis [BR:
prob03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
127221155 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
AAA_19
Motif
Other DBs
NCBI-GeneID:
127221155
NCBI-ProteinID:
XP_051039028
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MADAFGDELFSVFEDDSGTAGARKDKDKERGKEKRKGPPAPTDKAGKRLDAKLQSESASG
GRNKRDVDVEGADEPIFGKKPRIEDSVNEDLSLADLMPRVKVQSVETVEGCTHEVALPAD
EEYVPLKPRAGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALAL
REKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRG
SEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHL
HKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKG
DQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKM
VEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKAL
FATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMV
DEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIP
GVVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRL
VKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAN
PDEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDP
IDDMGIQDEGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAVDIKSAKREL
KKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFND
LSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL
SSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTEL
ENKFAEGITKIKRDIVFAASLYL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggacgagctcttcagcgtgttcgaggacgactcgggcactgca
ggggccaggaaggacaaggacaaggagcgggggaaggagaagaggaaggggccgccggcg
cccacagacaaggccgggaaacgactggatgccaaattacaatcagaatcagccagtggt
gggagaaacaagagagatgtcgatgttgaaggcgcagatgaacccatttttggcaagaag
cccagaatagaagactcagttaatgaagacttaagtttggcagatctgatgcccagagtt
aaggtacagtcagtggaaacagttgaaggctgtacacatgaggttgctcttcctgcagat
gaggaatatgtaccacttaaacctcgagctggaaaggcggcaaaggaatacccattcatt
cttgatgccttccaaagagaagccattcagtgtgtcgataataatcagtctgtgttagta
tctgctcatacatcagcgggaaaaactgtgtgtgctgagtatgctattgcattggcttta
agggaaaagcagcgtgtaatatttaccagcccaattaaggctctcagtaatcagaaatac
cgtgaaatgtatgaagagtttcaagatgttggtctgatgactggagatgttactattaat
cctacagcatcttgtctcgttatgactacagagattctgagaagtatgctgtatagaggt
tctgaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagat
tcagagcgtggtgtagtatgggaagaaacaattattttgctgccagataatgtccattat
gtctttctttcggctactattccaaatgcgcgacagtttgctgaatggatttgccaccta
cataaacagccctgtcatgtaatttatactgattatcgacctactccgttgcaacattac
atatttccagcagggggagatggccttcaccttgtggttgacgaaaatggtgacttcaga
gaagataactttaacactgcgatgcaagtgcttcgggatgcaggtgatttggccaaaggt
gaccagaagggacggaaaggagggacaaaaggtccatcaaatgtgttcaagattgtgaag
atgattatggaaaggaattttcaacctgtgattatcttcagttttagtaagaaagattgt
gaagcatatgctcttcaaatgactaaattagatttcaacacagatgaagaaaagaagatg
gttgaagaagtgtttagtaatgcaattgactgcttgtctgatgaagataaaaagctccct
caggttgaacacgtacttcctcttttgaaacgggggattggtattcaccatggtggttta
cttcctattttgaaggaaactatagaaattctcttttctgaaggactgataaaggcctta
tttgccacagagacttttgctatgggaattaatatgccagctagaactgttttatttaca
aatgcccgtaaatttgatgggaaggattttagatggatctcctctggtgagtacatccag
atgtctggccgcgctgggaggaggggaatggatgacagaggcattgtgattcttatggta
gatgagaagatgagcccaacgatcggaaaacaactacttaagggctcagctgatcccctg
aatagtgccttccatctgacctataatatggttttgaatttactacgagtagaagaaatt
aatcccgagtacatgctggaaaagtccttctaccagtttcagcattatagagcgattcca
ggagtggtggagaaggtcaagaattcggaagaacagtataataaaatagtgatccccaat
gaagaaaatgtggtcatctattacaagatcagacagcagcttgccaagctgggaaaagag
attgaggaatatattcacaaaccaaagtactgcttaccatttttacagccaggccgcctg
gtaaaggtgaaaaatgaaggggatgattttggctggggagtagtggtgaatttctcaaaa
aagtcaaatgttaagcctaattctggcgaactggaccccttgtatgtggtggaagtactc
ctgcgctgcagcaaagaaagcctgaagaactctgctaccgaggcagcaaagccagcaaac
cctgacgagaaaggagagatgcaggtcgttccagttttggtgcatctcttatctgccatc
agcactgttaggctttacatcccaaaagacctccggcctgtggacaacagacagagtgtt
ctaaaatccatacaggaagttcagaagcgttttcctgatggtgttcctttgttggatcct
attgatgatatgggcattcaagatgaaggactgaagaaagtcattcagaaagtagaggct
tttgagcatcgaatgtactcacacccgcttcacaacgatccaaatctggaaactgtgtat
acactctgtgaaaaaaaagcacagattgcagtagatattaaatctgcaaagcgtgagctg
aagaaagcaaggactgtcctgcaaatggatgaactcaaatgtcgaaagcgtgttttaaga
cggttaggctttgccacgtcttctgatgtcatagagatgaaaggacgtgtggcctgtgaa
ataagcagtgctgatgagctccttctcacagagatgatgtttaatgggcttttcaatgac
ctttctgcagaacaggcaacggcactattaagttgctttgtgtttcaagagaattctagt
gagatgcccaaattaacagaacagttagctgggcctcttcgacaaatgcaggaatgtgct
aaaaggattgcaaaagtttcggcggaagcaaaactggagattgacgaagaaacttaccta
agttcgttcaaacctcacttgatggatgtggtgtacacctgggcgactggagccacattt
gctcacatctgcaaaatgacagatgtcttcgaaggcagcatcattcgttgtatgaggcgc
ctggaagagctgcttcgacagatgtgtcaagcggcaaaagccatcggaaacacagagctg
gagaacaaatttgctgaaggaatcaccaaaatcaagagggacattgtgtttgctgccagc
ctctacttatag
DBGET
integrated database retrieval system
