Phodopus roborovskii (desert hamster): 127221445
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Entry
127221445 CDS
T08852
Symbol
Vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04140
Autophagy - animal
prob04148
Efferocytosis
prob05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127221445 (Vps16)
04148 Efferocytosis
127221445 (Vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
127221445 (Vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
prob04131
]
127221445 (Vps16)
Membrane trafficking [BR:
prob04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
127221445 (Vps16)
Hops complex
127221445 (Vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
127221445
NCBI-ProteinID:
XP_051039344
LinkDB
All DBs
Position
Unknown
AA seq
847 aa
AA seq
DB search
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELKDCLVAAAPYGGPIALLRNCGRKEKAA
SVRPVLEIYSASGVPLASLLHWNLSPPQWKSGPVVALGWSAEEELLCVQEDGTVLVYGLH
GDFRRHFSMGNEVLQNRVLDARIFHTEFGSGVAILTGAYRFTLSANVGDLKLRRMPEVPG
LQSAPSCWTTLCHERVAHILLAVGPDLYLLDHATCSTVTPAGLAPGVSSFLQMAVSFTYR
YLALFTDTGYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKEKAVVVAWERRLMVV
GNAPESIQFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEA
QKEYEKESQKADEYLREIQELGQLVQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDR
FPPDSFVRMCQDLRVLNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEY
LRLPEVQGVSRILAHWACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRT
ELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFM
TLRNQPMALSLYRQFCKHQELDTLKDLYNQDDNHQELGSFHIRASYATEERIEGRVAALQ
TAADAFYKAKNEFAAKATEDQMRLLRLQRRLEDELGGHFLDLSLHDTVTALILGGQNKRA
EQLARDFRIPDKRLWWLKLAALANLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEA
KKYASRVGPEQKVKALLLVGDVAQAADVAIEHRNETELSLVLSHCTGATDGATADKIQRA
RAQAQKK
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atggactgttacactgcgaattggaatccactaggggactctgccttttaccggaaatat
gaactgtacagcatggactgggacctgaaggaggaactcaaggattgtttggtggctgct
gcaccctatggaggtcccattgctctactgaggaactgtgggagaaaagagaaagctgcc
agtgtgcggccagtactggagatctactctgcttctggcgtcccactggccagcctgctg
cattggaacctctctcctccacagtggaagagcgggcctgtggtggcccttggctggtca
gctgaggaggagctgctctgtgtgcaagaagatggcacagtgctagtctatgggcttcat
ggagacttccggaggcacttcagcatgggcaatgaggtgcttcagaaccgagtcctagat
gcccggatctttcacactgagtttggttctggggtggccatcctcacaggggcctatcgc
tttaccctgagtgccaatgtgggtgacctcaaactccgtcggatgccagaggtaccaggt
ctgcaaagtgcaccctcatgttggaccacactgtgccatgagcgagttgcgcacattctt
ctggctgtagggcctgatctttacctcttggatcatgctacctgctccacagtgacacct
gctggtctagccccaggagtgagcagcttcctacagatggctgtatccttcacatatcgt
tacctggcactcttcacagacacaggctacatctggatggggacagcatcactcaaggag
aagctgtgtgagttcaactgcaacatccgggctcctccgaagcagatggtctggtgtagc
cgtcctcgaagcaaggaaaaggctgttgtggtggcctgggagagacggctgatggtggtg
ggcaatgcgcctgaaagcattcagtttgtgctagatgaggactcctacttagtgcctgag
cttgatggggtccgcatcttctcccgcagcacccatgagtttctgcatgaagttccagtg
gccagtgaggagatcttcaaaattgcctcaatggcccctggagcactgctgttggaggcc
cagaaggaatatgagaaagagagccagaaagcagatgagtacctacgagagatccaggag
ctgggacagctagtccaggctgtgcaacagtgcattgaggctgcaggacacgagcaccag
ccagacatgcaaaagagtctgctcagggcagcttcctttggaaagtgtttccttgacaga
tttccacctgacagtttcgtacgcatgtgtcaggacctgcgagtgctcaatgctattaga
gactaccacattgggatccctctgacctatagccaatacaagcagctcaccatccaggtg
ctgctggacaggcttgtattgcggaggctttaccccctagctattcagatatgcgagtac
ctgcgccttcctgaagtacagggtgtcagcaggatcctagcccactgggcctgctacaag
gtgcagcagaaagatgtctcagatgaggatgtagcgcgggctattaatcagaagctgggc
gacacacctggtgtttcctattctgacattgctgcacgagcctatggctgtggccgcact
gaactagccatcaagctgctggaatatgagccacgatcaggggagcaggtacctcttctc
ctaaagatgaagaggagcaaactagcactgagcaaggcgattgagagtggggacactgac
ctggtgtttacagtgttgctgcacctaaagaatgaactaaatcgaggagactttttcatg
actctccggaaccaacccatggccctgagtttgtatcgacagttctgtaagcatcaggag
ctagacactctgaaggacctttacaatcaagatgacaatcaccaggagttgggcagcttc
cacatccgagccagctatgctactgaggagagaattgaggggcgagtagcagctctgcag
acggcagctgatgccttctacaaggccaagaatgaatttgcagccaaggccacagaagat
caaatgaggctcctgaggctacagcggcgtctagaagatgagctggggggccacttccta
gacctgtctctacatgacacagtcactgctcttatccttggaggccaaaacaagcgtgca
gagcagctggcacgtgactttcgcatccctgataagaggctctggtggctaaagctggct
gccctggcaaatttggaagattgggaggagctggagaagttttccaagagcaagaaatca
ccgattggctacctgccctttgtagagatctgcatgaaacaacataacaaatacgaagcc
aagaaatatgcttcccgggtgggacctgagcaaaaggtcaaggctttgcttcttgtcggg
gacgtggctcaggctgcagatgtggctattgagcaccggaatgaaaccgagctgagcctg
gttttgtcccactgcactggagctacagatggtgccacagctgacaagattcagcgggcc
agagcacaagcccagaagaagtaa
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