Phodopus roborovskii (desert hamster): 127221550 Help Entry 127221550         CDS       T08852                                  Symbol Spg11 Name (RefSeq) spatacsin   KO K19026   spatacsin Organism prob  Phodopus roborovskii (desert hamster) Pathway prob04142   Lysosome prob05014   Amyotrophic lateral sclerosis prob05022   Pathways of neurodegeneration - multiple diseases Brite KEGG Orthology (KO) [BR:prob00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     127221550 (Spg11)  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     127221550 (Spg11)    05022 Pathways of neurodegeneration - multiple diseases     127221550 (Spg11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:prob03400]     127221550 (Spg11) DNA repair and recombination proteins [BR:prob03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      127221550 (Spg11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spatacsin_C Sacchrp_dh_C Motif Other DBs NCBI-GeneID:  127221550 NCBI-ProteinID:  XP_051039505 LinkDB All DBs Position Unknown AA seq 2454 aa AA seqDB search MSVTHAGASTGRSTWAKMAAKLGPGSVSSPGCAGAMERVLPMLLVQIPAKETAQLGSRAQ LHREQEALGSLTAAGSLQVLSLAPGSRGGSSCCLQGPFGHFIWEDTRDSSSSISADKPKL LAVSEDYELRIYEFDLKDGRCNATLSHSCCGRTLQRLIEDQGVNISFKSLRILSFHNNTA LLLINRCLVLRIVFSGRESGSILDCFPLPLPAQTTDTVIDVQLCRGLLFVLSTLGWIYIF DTSDGMHVAHVDLALLQEDSEQHEAASVSSFTSLKVSQDLDILVIVSSSNTAIALNLNLY FRQHPGHLLCEGTLEDLPIEGPAGIDEDDLANSVHNMKLTKVSFQVDRSWRAQLSSLNET TRSLKPEVSCCAPWFQGVLHLESPESGNHTPVVPNHVFIPGDVTCGRCAFPQKRHIETGD PRRPWEAMHLREQEQPAELKCMSVTAFTALFTCAVGTTSCTIVLWDLETQSMQCFSLSQK CTPVDSSGDQQLCLVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWGRCSI PIHALEAGIENRQLDTVDFFLKSKENLLTPSSKSPVPDQLHHFSSQLYLTQVEEMTAALD LLCSAIRESDSETQSKHFAEQLLHLTLSFLNRQIKELFAHTEEIDEHLQKGVDILTSYIN ELRTFMIKFPWKPADATDEYDVNKDVLTVKEGKIWEKLNFEEVIADAILNNKIPEAQTFF RITNHPAQRLEELVRIGLDLVFDSLKKNNVEEASTLLRNMGFNVEDELLKICFYTTDKNI RDFLVEVLKEKECFSEKERRTVDFVHQVEKFYSGHFQENVQVQSFPRYWIKEQDYFKHKS ILDTFLKRDKKDEFNEQDYRIALNWAHWWDPQTQQCILLPRISPEEYKAHSPDALWKYLT ARHDWSSVSLWIEEFQTQETGSPQQNKWPPLSVDVIDQNTCCNSYMRNKILDKLARSGVF LTSELEDYELFLLRLSRIGGVMQDTLPVQSYRSSGGWDFHSHFILYCLEHGLQHLLYVYL DYYKLSPGNCPFLEKKELHEAHPWLEFLVQCRQVSSNLTDPKLIFQASLANAQILIPTNQ ASVSSMLLEGHTLLALATTMYAPGGVSQVIQNEESENCLKKVDPQLLKMALTPYPKLKAA LFPQCTAPSILPSDITLYHLIQSLPPFDPSRLFGWQSANTLAIGDTASQLPHFSSPDLVS KYAVVERLNYAYYLHHGRPSFAFGTFLVQELIKSKTPKQLIQQVGKEAYTLGLASSHSPS VGTACVCFLELLGLGSLKLRVDMKMANVILGYKCRNEDVHPSFIRESLAEKLSKLADGDK ATTEELLVLLEEGVWSSIEQQGWNRLSSESSSQWALVLQFCTAHSMKLSVSYLRECAKAN DWLQFLVHSQLHNYHPEEVKSLLQYFNPILQSHLKLAFEKLSSGSISRVDGDQDYQYLQE LERNREEMRDFFEILHQCSEESASWCWLLAEAVKQRAPILSVLASCLQGASAVPCLCVWI VTSVEDRVAAEAMEHIQASVEDYPWSLEDLSIIWRTVLTRQKSHTLIRGFRLFIKDSPLL LIMEMYELCMFFKNYEKAKVKLVEFQKSLETLDTAATKVLPVIPATWIKDQVCFLLKLMP RQCETQYELGKTLQLLVGTEHLFSDGPDVQKLCALSQILKDTPIAINPAVINNYSTETFQ HECRSILEKLKADGQFAVARRVAELAALPADSLVIEQLTQEMKTLEHTQQWLLKHTRIDF WKKCHEIFKKNSISNRAASSFFSSQVPVVSEHTTDQGSLEERHLLLTLVGYWLAREEPVP LEELEELEKQTWICRITQHTCGGGPEETQPSPSQKKSAGAELSFDSLADEFSFSKLAALN ASKYLDLNGLPSKEMCENTLGRKERESLHVLVGQLLDGGCVHEASRVCRYFLFYSQDVAL VLHCRALASAETSTEDLHPEIRALLPSAALPEDQESPSVPLRKVHSTSSLDSQSFMMAPS TDEVARNLQALTSKCLHGKNSCRQVLCLYELAKELGCSYEDVAARDSEAMLRTILASQRP DRCRQAQVFISTQGLEPDTVAELVAEEVTRELLTPSEGTGGEKQPFNPAENQTFLQLTAI CQDRTLVGMKLLDRIPSVPHGELSCTTELLILAHHCFTFTCHMEGIIRVLQAARMLTDNH LAPNEEYGLVVRLLTGIGRYNEMTYIFDLLHQKHYFEVLMRKKLDPSGTLKTALLDYIKR CRPGDSEKHNMIALCFSMCREIGENHEAAACIQLKLIESQPWEESLKDGAQLKQLLLKAL TLMLDAAESYAKDSCVRQALHCKRLTKLITLQIHFLNTGQNTMLINLGHQKLMDCIMALP RFYQASIVAEAYDFVPDWAEVLYQQVILKGNFSYLEEFKQQKLLRPNIFEDISKKYKQHQ PTDRVTENLKKLLSYCEDIYLHYKLAYEHRFFEIVNVLLKDPQTGCCLKDMLTG NT seq 7365 nt NT seq  +upstreamnt  +downstreamnt atgtccgtgacgcatgcgggtgcctctaccggaaggagcacctgggccaagatggctgcc aagctggggcccggaagtgtttcctcccccggctgtgccggggccatggagcgggttcta cctatgctgctggtgcagatccctgccaaggagacggcgcagctgggatcgcgggcacag ctgcaccgagagcaggaggctctggggagcctgacggctgcgggcagtctccaagtgctg tccctggcgcccggcagcaggggtggaagcagctgctgcctccaaggccccttcgggcac ttcatctgggaggatactcgtgacagcagcagcagcatatccgcagacaagcccaagctg cttgctgttagcgaagattatgaactgcgcatctatgaatttgatctgaaagatggaaga tgcaatgcaaccttatcacacagctgttgtgggaggacactgcaaaggctcattgaagat caaggagtcaatatttccttcaaatctttgagaattctgtcatttcacaacaacacagcc ttactgctcatcaacagatgtctcgtcctccgcattgtattttcggggagagaatctggg agtatactggactgcttcccactgcccttgccggcacagacgacagacacggttattgat gtgcagctctgcaggggacttctttttgttctgagtacattaggctggatctatattttt gacacttcggatggcatgcatgtagctcatgtggacttggctcttctccaagaagattct gagcagcatgaggcagccagcgtttcttcctttacgtcattgaaagtgtctcaagactta gatattttggtgattgtcagctcatccaacactgccattgctcttaacctaaatttgtat ttcaggcaacacccaggacacctactatgtgaaggaacactggaagaccttcccattgaa gggcctgctgggatagatgaggacgaccttgctaactctgtccacaacatgaaactgacc aaagtttcctttcaagttgataggtcttggagggcccagctgtcatcactaaatgaaaca acaagaagcttgaaaccagaggtttcctgttgtgctccgtggttccagggtgttttacat ttggagtccccagaatctggtaaccacactcctgttgtgccaaaccatgttttcatccca ggggatgtcacatgtggcaggtgtgcttttccacagaagaggcacatcgagacaggtgat ccaagaagaccatgggaggcaatgcacctgagagaacaggagcagcccgcagagctcaag tgtatgtctgtgactgcgtttactgcactgtttacctgcgcagtaggaacgaccagctgc accattgtcctctgggacctggagactcagagcatgcagtgtttttctctcagccagaag tgtactcctgtggatagcagtggagaccagcagctgtgccttgttttgacagagaatggt ctctctctcattttgtttggtctaactcaagaggagtttttgaacagactgatgatacat ggaagtgccagcactgtggattccctttgtcatctcaatggttggggacggtgctcaatt cctatacacgctctagaggctggcatagaaaatcggcagctggacacagtagatttcttc ttgaagagcaaggaaaatcttcttactccatcttcaaaatctcctgttcctgatcagctg caccacttttcatcccagttatatttaacacaggtggaagagatgacggcagcgttggat ttgctttgctcagcaattagagaaagtgactctgagacccagagcaagcactttgcagag cagctgcttcaccttacactgtctttcctcaacagacaaataaaggagctttttgctcac actgaagagatagatgagcatctacagaaaggagtggacattttgaccagctacatcaat gaacttcgaactttcatgataaagtttccttggaagccagcagatgccactgatgaatat gacgtaaacaaagatgtcctcacagtaaaggaaggcaaaatttgggagaaactcaatttt gaggaagttatcgctgatgccattttaaataacaaaataccagaggcacagactttcttc agaattactaatcatcctgctcaacgacttgaggagctggtcagaataggcctggattta gtgtttgacagtttgaaaaagaacaatgtagaggaagcctccacgctcttaaggaatatg ggcttcaatgtggaagatgagttgctcaagatatgcttctatacaactgataaaaatata cgggactttttggttgaagttttaaaagaaaaggaatgtttttctgaaaaagaaagaaga actgtagactttgttcatcaagttgaaaagttttattcgggacatttccaagaaaatgta caggtgcagtcctttcccagatattggataaaagaacaggactatttcaagcacaaatct attttggacacattcctcaagcgtgataagaaagatgagtttaatgaacaggactataga attgcactgaattgggctcactggtgggatccgcaaacacaacaatgcatccttctcccc aggataagtccagaagaatacaaagcacattccccggacgccctctggaaatacctcaca gctcgccacgactggtcaagcgttagcttgtggattgaagaatttcagacccaggaaact gggtcacctcagcagaacaagtggccccctctgagtgttgatgtcattgatcagaatact tgctgcaacagttacatgaggaataagattttagacaagctggccaggagtggggttttt ctcacatctgaactagaagattatgaacttttcctcctgagactcagcaggattgggggc gtaatgcaagacaccctccccgtgcaaagctacagatcctcaggaggatgggattttcac tcccacttcatcctctactgtctagagcacggcctacagcatctgctctatgtctatctt gactattacaaacttagtcctggaaattgtccttttttggaaaagaaagaactacatgaa gctcacccttggcttgaatttttggttcagtgtcggcaagtttccagtaacttaacagat cccaaactgatcttccaggctagccttgcaaatgctcagattttgattcccaccaatcag gccagtgtaagcagtatgctgttggaaggacacaccctcctggcccttgctactaccatg tacgctcctgggggtgtcagccaggtcattcagaatgaagaaagtgagaactgtttgaag aaagtggacccccagctattgaagatggcgttgacgccttacccaaagctcaaagctgcc ctcttcccgcagtgcactgctcctagtattctgccctctgatattacactctaccacctc attcagtctttgccgccctttgatcctagcagattgtttggctggcagtctgccaacaca ctagcaataggagatacagccagccaactcccacatttttccagccctgacctggtgagt aaatacgctgtagtggaacgtctgaattatgcgtattatttacatcatggacgcccatca tttgcctttggtacttttctggtccaggagttaatcaagagtaagactcccaaacaactg atccagcaagtaggcaaggaggcctatactttagggctggcttcctcccacagcccttca gtagggactgcctgtgtttgcttcttagaattgcttggtcttggcagcctcaagctcaga gttgacatgaaaatggcaaatgtgattctgggctacaagtgtagaaatgaagatgttcac cccagctttataagagagtctctagctgaaaaactgtctaagcttgctgacggtgacaag gccaccacggaagagttgctcgttctcttggaagaaggtgtgtggagcagtatcgagcag cagggttggaacaggttgtccagtgaatccagcagccaatgggcactagtgttacagttc tgcacagcccacagtatgaaactgagtgtgtcctaccttagagaatgtgccaaagcaaac gattggctgcagttcctggttcacagccaactccataactaccacccagaagaggtgaaa tctcttctgcagtacttcaacccaatccttcagagccacttgaagctggcctttgagaag ctgtcatcagggtccatctctagagtggatggtgatcaagactaccagtacctgcaggaa ctcgagagaaacagagaggagatgagggatttctttgaaattctccaccaatgctcggaa gagtcagcctcttggtgctggctcctcgctgaggcagtgaaacagcgggctccaatcctc agtgtcctagcctcttgtctccagggagccagtgctgtgccctgtctctgtgtttggatt gtcacctctgtggaggacagggttgcagctgaagcaatggaacacatccaggcctctgtg gaggattatccatggagcctcgaggacctgtccattatctggagaactgtattaacaagg caaaagagccacactctcatccgaggcttccggcttttcattaaggattccccacttctc ttgattatggagatgtacgaactgtgtatgttcttcaagaattatgagaaagccaaagtt aagcttgtggagttccagaaaagtcttgagacgcttgatacagcggctacaaaggtcctt ccggttatacctgccacatggataaaggatcaggtgtgtttccttttgaaacttatgcca cggcaatgtgagacgcagtatgagctagggaagaccctccagctgcttgttgggactgag catctcttctctgatggtccagatgtgcagaagctgtgtgccctcagccaaatcttgaag gatacacccatagccatcaaccctgcagttattaataactacagcactgagacttttcag catgagtgtagatcaattttggaaaagctgaaggcagatggacagtttgctgtggccagg agagtggcagagttagcagcattacctgcagacagcttggtgattgaacagctaacccag gaaatgaagacactagaacacactcagcagtggctcctcaaacacacaagaattgacttc tggaaaaaatgtcatgaaatctttaagaaaaactccatttcgaacagggcagcctcttcc ttcttctccagtcaggtcccggtggtgagtgagcacaccactgaccaaggcagtcttgag gagcgccatctgctgctcacgctggtggggtactggcttgcccgagaagagcctgttccc ttggaggagctggaagagctggagaaacagacctggatctgccgtatcacccagcacacc tgtggagggggcccagaggaaacccagcccagcccctctcaaaagaagtcagctggtgct gaactctcctttgatagcttagccgacgagttttccttctccaagcttgctgctttgaac gcatccaaatacttagaccttaatggtcttccatccaaagagatgtgtgagaacacactg ggtaggaaggaacgggagtcactgcatgttctggttggacagctgctggatggtggctgt gtgcatgaagcaagtcgagtgtgcaggtacttcctcttctacagccaggatgtagcgcta gtgttgcactgtagggccttggcctctgcagagaccagcacagaagacctgcacccagag atccgcgcccttctcccaagtgccgcactgcctgaggaccaggagagccctagtgtccct cttcggaaagtccatagcacttcaagtttggatagtcagtcgtttatgatggcaccatct actgatgaagtggcaaggaatctccaagctctcacaagcaagtgcctccatgggaagaac tcctgccggcaggtcctctgtctgtatgaacttgccaaggagttgggctgctcctatgaa gatgttgctgccagggacagtgaagccatgctccggacaatcttggcttctcagcggcct gacagatgcagacaagcccaggttttcatcagcacccagggccttgagccagacactgtg gctgaactagtggctgaagaggtgacccgagagctgctgaccccatcagagggaacagga ggagaaaagcaacctttcaacccagcagaaaaccagacatttcttcagctaactgctata tgtcaagaccgcacactggtaggcatgaagctgctggacaggattccctccgtcccccac ggggagctgtcctgcaccacagagctcctgatcctggctcatcactgcttcacctttacg tgccacatggagggcatcatcagagtcctgcaggctgcccggatgctcacagataaccac ttggctcccaatgaggagtatgggctggtggtacgcctcctcactggcattggaaggtac aatgagatgacatacatatttgacttgctgcatcaaaagcactattttgaagttctgatg agaaagaaactagatccgagtggtaccctgaaaacagccttgctagactacatcaaacgc tgccgccctggagacagtgaaaagcacaacatgattgccctgtgcttcagcatgtgccgg gagataggggagaatcatgaggcagcagcctgtatccaactgaagctaattgaatctcag ccctgggaggagagcctcaaggatggagcccaactaaaacagctcctacttaaagccctg actctgatgttggatgcagcggagagttatgccaaggactcctgtgtgcgacaggcccta cactgtaaacggctcaccaagttgataacactacagattcactttctgaacactggtcag aacacaatgcttatcaacttgggccatcagaagctaatggactgtatcatggccctacct aggttctaccaggcttctattgtagctgaggcctatgactttgttcctgactgggctgaa gttctttaccaacaagtgattcttaaaggaaacttcagttacttggaagaatttaagcag caaaagttactaagacccaatatatttgaagacatttccaaaaaatataaacaacaccag cctaccgacagggtcacagaaaacctgaagaagttactttcatattgtgaagatatctac ctgcattacaagctggcatatgaacacagattttttgaaattgtgaatgtgcttctgaag gaccctcaaacaggatgctgtcttaaagatatgctcacaggttag

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