Phodopus roborovskii (desert hamster): 127221596
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Entry
127221596 CDS
T08852
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04140
Autophagy - animal
prob04148
Efferocytosis
prob05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127221596 (Vps39)
04148 Efferocytosis
127221596 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
127221596 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
prob04131
]
127221596 (Vps39)
Membrane trafficking [BR:
prob04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
127221596 (Vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
SAM_CEP-1_C
KCTD11_21_C
DUF4145
Motif
Other DBs
NCBI-GeneID:
127221596
NCBI-ProteinID:
XP_051039594
UniProt:
A0AAU9Z862
LinkDB
All DBs
Position
Unknown
AA seq
886 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHTETGEEVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCA
LNWTDIPVAMEHQPPYIIAVLPRYVEIRTLEPRLLVQSTELQRPRFITSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDTEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLIFSYSVWVLRDFPDDGLKIFTEDLPEVESLPRDRVLSFLMENFKSLA
IPYLEHIIHVWEETGSQFHNCLIQLYCEKVQSLMKDYLLSLPTGKSPVPAGEEMGELGEY
RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAK
EYCHKHYDQNKEGNKDVYLSLLRMYLSPPSIHCLGPIKLDLLEPQANLQAALQVLELHYS
KLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVSSADT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccggtgccgatcctggaaaagctccccctgcaaatcgactgc
ctggctgcctgggaggaatggcttcttgttggaaccaaacaaggacatctccttctctac
aggattcggaaggatgttgtgccagcagatgtagcctcacctgaaagtggcagttgtaac
aggtttgaggtaacactagagaagtccaataagaacttttccaaaaagatccagcagatc
catgtggtttcccagtttaagattctagtcagcttgttagaaaacaacatttatgttcat
gacttgctgacatttcaacaaatcactacagtttcaaaggccaagggagcatcattgttc
acctgtgacctccagcacactgagacaggcgaggaggtgttgaggatgtgcgtggccgtg
agaaagaagctgcagctgtatttctggaaggacagggaattccacgaactgcagggggac
tttagtgtacccgatgtacccaagtcgatggcatggtgtgaaaattccatctgtgttggc
ttcaagagagactactatctgatcagggtggatggaaagggatccatcaaagagctcttc
ccaacaggaaagcagctggagcccttggtggcacctctggcagatggaaaagtggctgtg
ggtcaggatgatctcactgtggtactcaacgaggaaggcgtctgcacacagaaatgcgcc
ctgaactggacagacatcccagtggccatggagcaccagcctccatacatcattgcagta
ttgccccgatacgtggagatccgaacccttgaaccaaggcttctggttcagagcactgag
ttgcaaaggccccgcttcattacctcaggaggatcaaacattatctatgtggccagcaat
cattttgtttggagactcattcctgtccccatggcaactcagatccaacaacttcttcag
gacaagcagtttgaactggctctgcagctcgcagaaatgaaagatgactcagacactgag
aagcagcagcaaatccatcacattaagaacttgtatgccttcaacctcttctgccagaag
cgctttgatgagtccatgcaggtctttgctaaacttggcacagatcccacccatgtgatg
ggcttgtaccctgacctgctgcccacagactacaggaagcagctacagtaccccaacccg
ctgcccacactctctggtgccgaactggagaaggctcacttagctctcattgactacctg
acacagaaacgaagtcagttggtaaagaagctgaatgactcagatcaccagtccagcacc
tccccgctcatggaaggcactcccaccatcaagtccaagaagaagttactacagatcatc
gacaccaccctgctcaagtgctacctccatacaaacgtggccctggtggctcctttgcta
cgactggagaacaaccactgtcacatcgaggaaagcgagcacgtgctgaagaaggctcac
aagtacagtgaactcatcatcttgtacgagaagaaggggctccatgagaaagctctgcag
gtgctagtggaccagtccaagaaagcaaactcacctctgaaaggccacgagaggacggtg
cagtatctgcagcacttgggcacagaaaacctacatttgattttttcctactccgtctgg
gtgctgagagacttcccagatgacggcctgaagatattcaccgaagacctcccggaggta
gagtccctgccgcgagatcgagtgctcagcttcttaatggagaatttcaagagtctagcc
attccttacctggaacacatcatccatgtgtgggaggaaacaggctcacagttccacaac
tgtctgatccagctgtactgtgagaaagtacagagtctgatgaaagactaccttctgtcc
ctgcccacaggcaaaagccccgtccccgctggagaggaaatgggtgagctgggagaatac
cggcagaaactgctcatgttcttggagatttccagctactatgacccaggccggctcatc
tgtgattttccctttgatggcctcttagaagaaagagctctcctgttggggcgcatggga
aagcatgaacaagctctcttcatctatgtccatgtcttgaaggacacaaagatggctaag
gagtactgccacaaacactatgaccaaaacaaagaaggcaacaaagatgtatatctgtcc
ctgcttcggatgtacctgtcaccccccagcatccactgcctggggcccatcaaactggac
ctactggagccacaggccaacctccaggctgccctgcaggtcctagagctgcactacagc
aagttagacaccaccaaggcgatcaaccttctaccagcaaacactcagatcaatgacata
cgcatctttttagaaaaggtcttggaagaaaatgcacaaaagaaacggttcaatcaagtg
ctcaagaaccttctccatgctgagttcctgagagttcaggaagagcggattttacaccag
caggtgaagtgcatcatcactgaggagaaggtgtgcatggtgtgcaagaagaagattggg
aacagtgcatttgcaagatacccaaatggagtggttgtgcactacttctgttccaaagag
gtcagctcagccgacacctga
DBGET
integrated database retrieval system
