Phodopus roborovskii (desert hamster): 127223410
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Entry
127223410 CDS
T08852
Symbol
Smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127223410 (Smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127223410 (Smg7)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127223410 (Smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
127223410 (Smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
127223410
NCBI-ProteinID:
XP_051041929
LinkDB
All DBs
Position
Unknown
AA seq
1209 aa
AA seq
DB search
MFLQIVIVGENVSFKSQMRTENLKSEEHLKSSNIRQAEVLKAEMTDSKLGPAEVWTSRQA
LQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFL
EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCL
VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV
KFPFPAASTNLQKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREK
LEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALF
MSFLGILCKCPLQNDSQESYNAYPLPAVKVSMDWLRLRPRIFQETVVDEKQYIWPWLISL
LNSFHPHEDDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQ
QRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEAKENLILQETSVIESLA
TDGSPGLKSVLSTGRNPSNSCDTGEKPVVTFKENIKPREVNREQGRSFPPKEVRRDCSKG
VTKEDGKKDSNKRRAETKRCTLGKLQETGKQNVAVQVKSQTELRKTPVSEARKTPVTQTP
SQANNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQS
TAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQPPLTSLPAQPTAQSTSQ
LQVQALAQQQQSPTKVIPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLGKIMPVKQ
PYYLQTQDPIKLFEPSLQPPVIQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMA
DNRAVMAQQPNMDRRSKRSPGVFRPEQDPVPRMPFEDPKSSPLLPPDLLKSLAALEEEEE
LIFSNPPDLYPALLGPLASLPGRSLFKSLLEKPSELMSHSSSFLSLTGFSVNQERYPNSS
MFNEVYGKNMTTSSKAELNPSVASQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSN
PSSLPSSPPTHNHNSAPFSNFGPIGTPDNRDRRPTDRWKTDKPAMGGFGVDYLSATSSSE
SSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQR
GQGAMNPPH
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgcagatagtcattgtgggagaaaacgtttcatttaagtcccagatgaggacc
gaaaacttgaaatcagaggagcatctgaaatcaagtaatattaggcaggcagaagtcctg
aaggctgaaatgacagattctaagctgggtccagctgaagtctggacatccaggcaagct
ctgcaggacttgtaccagaaaatgctagttactgatctggaatatgctttagacaagaaa
gtagaacaggatctctggaatcacgcctttaagaatcagatcacaacactacaaggccaa
gcaaagaatcgagcaaacccaaatcggagtgaagtccaggcaaatctttctctgttccta
gaggcagctagtggcttctatactcagttattacaggaactgtgtacggtgtttaatgta
gatttgccatgccgtgtgaagtcttcccaattgggaattattagcaataaacagacgcac
accagcgccatagtgaagccacagtctagctcctgttcctacatttgccagcactgcctc
gtccaccttggagacattgctcgatacagaaaccagaccagccaggcagagtcctactat
aggcatgcagctcagcttgtcccctccaatggtcagccttacaatcagttggctatctta
gcttcttctaaaggagaccacctgaccacaattttctactactgcagaagcattgctgtg
aaattccctttcccagctgcctccactaatctacaaaaagcactttctaaagcactggaa
agccgggatgagttgaaaaccaagtggggtgtttctgacttcatcaaggcgtttattaaa
ttccacggtcatgtttacctgagtaagagtttggaaaaattgagtcctcttcgagagaag
ttggaagaacagtttaagaggctgctattccaaaaagcctttaactctcagcagttagtg
catgtcactgtcattaacctgtttcaacttcatcatcttcgtgacttcagcaatgaaaca
gagcaacatagttacagccaagatgagcaactatgctggacacagttactggccctcttt
atgtcttttcttggcatcctgtgcaaatgtcctctccagaacgattctcaggagtcctac
aatgcctatccccttcctgcagtcaaggtctcaatggactggctaagactccgacctcga
atctttcaggaaacagtggtggatgaaaaacagtatatttggccctggctaatttctctt
ctaaatagtttccatcctcatgaagatgatctctcaagtactaatgccacaccacttcca
gaggagtttgaattacaaggtttcttggctttaagaccttctttcaggaacttggatttt
tccaaaggccatcagggtattacaggagacaaagaaggtcagcagagacgaatacgacag
cagcgtctgatctctataggaaagtggattgctgacaatcagccacgactgattcagtgt
gaaaatgaggtagggaaactgttatttatcacagaaattccagaattaatactagaagac
cccagtgaagccaaagagaacctcatcctacaagaaacatctgtgatagagtcactagct
actgatgggagcccaggactgaagtcagtgctgtctacgggccgaaatccaagcaacagc
tgtgacacaggagagaaaccagtggtcaccttcaaagagaacattaagccacgagaagtg
aacagagagcaaggaagaagctttcctcccaaagaggtgagaagggactgtagcaaaggt
gtaactaaggaggatggaaagaaggacagcaacaagaggagagctgagaccaagagatgc
accttaggaaagttacaggaaacaggaaagcagaatgtggcagtgcaggtaaaatcccag
acagaactaagaaagactccagtgtctgaagccaggaaaacacctgtcactcaaactcca
agtcaagcaaataattctcagttcatccccattcatcaccccggagccttccctcctctt
cccagtcgaccagggttcccgcccccaacatatgttatcccccctcctgtggcattttct
atgggctcaggttacaccttcccagctggtgtttctgtcccaggaacctttcttcagtct
acagctcactctccagcaggaaaccaggtgcaagctgggaaacagtcccacattccttac
agccagcaacggccctctggaccagggccaatgaaccagggacctcaacaatcacagcca
ccttctcagccaccccttacatctttaccagctcagccaacagcacagtctacaagccag
ttgcaggttcaagctctagctcagcagcagcaatcccctacaaaagtcataccagctttg
gggaaaagcccacctcaccactctggattccagcagtatcagcaggcagatgcctccaaa
cagctgtggaatccccctcaggttcaaggcccactagggaaaatcatgcctgtgaaacag
ccctactaccttcaaacccaagaccctataaaactgtttgagccgtcattgcaacctcct
gtaatacagcagcagcctctagagaaaaaaatgaagcctttccccatggagccatataac
cacaatccctcagaagtcaaggtcccagagttctactgggattcttcctacagcatggct
gataacagagcagtaatggcacagcaaccaaatatggaccgcaggagcaagcggtcacca
ggagtcttccgtccagagcaggaccctgtgcccaggatgccgtttgaggaccccaagagc
tcccctctgcttcctccggacctgttaaagagtctggctgccttggaggaagaggaagag
ctgatcttttctaaccctcctgatctttacccagctttgctgggtcctctcgcctctctt
cctggacgaagcctctttaaatccttactggagaaaccttcagaactcatgtcacactca
tcttctttcctgtccctcactggattctctgtcaatcaggaacgatatccaaacagtagt
atgttcaatgaagtgtatggaaagaacatgacaaccagctccaaagcagaactgaacccc
tcagttgcctcccaggaaacatcattgtactccctttttgaagggaccccttggtctcca
tcacttcctgccagttcagatcattcaacaccagccagccagtctcctcattcctctaac
ccaagcagcctgcccagttctcctccaacacataaccataattctgctcctttctctaat
tttggacccattgggactccagataacagggataggcggcccacagatcgatggaaaact
gataaaccagctatgggtggttttggtgttgattatctctcagcaacatcatcatctgag
agcagttggcatcaggctagcactccaagtggcacctggacaggccacggcccctccatg
gaggattcctctgctgtcctcatggaaagcctaaagtctatctggtccagttccatgatg
catcctggaccctccgctctggagcagttgttaatgcagcagaagcagaaacagcagcgg
ggacaaggtgccatgaaccctccacactga
DBGET
integrated database retrieval system
