Phodopus roborovskii (desert hamster): 127223458
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Entry
127223458 CDS
T08852
Symbol
Cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04115
p53 signaling pathway
prob04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127223458 (Cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
127223458 (Cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
prob04121
]
127223458 (Cop1)
Enzymes [BR:
prob01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127223458 (Cop1)
Ubiquitin system [BR:
prob04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127223458 (Cop1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
127223458 (Cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EIPR1
zf-C3HC4_2
WDR55
Beta-prop_RIG_2nd
EIF3I
zf-C3HC4
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
zf-RING_UBOX
Beta-prop_CAF1B_HIR1
zf-RING_2
Beta-prop_EML
zf-C3HC4_3
Beta-prop_DCAF4
zf-RING_5
zf-C3HC4_4
Beta-prop_WDR90_POC16_2nd
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WD40_like
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
zf-RING_4
zf_C2H2_10
zf-RING_11
Sina_RING
zf-Nse
Motif
Other DBs
NCBI-GeneID:
127223458
NCBI-ProteinID:
XP_051042018
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MSGSRQAGSGSAGTSPGSSAASSVTSASSSLSSSPSPPSAVASAAALVSGGAAPAAGSGG
LGGPGRPVLVAAAVSGSASGGGAVSAGLSRLSCTARPSAGVGGSSSSLGSSSSSSSSSRK
RPLLAPLCNGIHNSYEDKSNDFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNNRCP
KCNYVVDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDLLGTDQD
NLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEE
DIKRVEEMSGLYSPVSEDSTVPQFEAPSPSHSSIIDSTEYSQPSGFSGTSQTKKQPWYNS
TLASRRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLDEFQECLSKFTRYNSVRPLATL
SYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNS
KISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLAS
GSDDAKVKLWSTNLDNSVASIEAKANVCCVKFSPSSRYHLAFGCADHCVHYYDLRNTKQP
IMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNVGKPYCLRSFKGHINEKNFVGLASN
GDYIACGSENNSLYLYYKGLSKTLLTFKFDTVKSVLDKDRKEDDTNEFVSAVCWRALSDG
ESNVLIAANSQGTIKVLELV
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtagccgccaggcaggctcgggttccgctggaacaagccccggttcctcggcg
gcctcttcggtgacttccgcctcctcgtccttatcctcgtctccgtcgccgccttccgcg
gtggcctctgcggcggcgctggtgtctggcggggcggctccggccgcgggctcgggcggc
ctcggcggcccggggcggcctgtgctagtggcggccgcggtgtccggcagcgcgagcggc
ggcggggcggtgtccgcgggcctttcccggctcagctgcacggccaggcccagcgccggg
gtcggagggagcagctccagcctgggcagcagcagcagcagcagcagcagcagtaggaag
cgaccgctgctagccccgctctgcaacgggatccacaactcctacgaggacaaaagcaac
gacttcgtctgtcccatctgctttgatatgattgaggaggcatacatgacaaaatgtggt
cacagtttttgctacaagtgtattcatcagagtttggaggacaataataatagatgtccc
aagtgtaattatgttgtggacaatattgaccatctctatcctaatttcttggtgaatgag
ctcattctcaaacagaagcaaagatttgaggaaaagaggttcaaattggaccactcagtg
agtagcaccaatgggcacaggtggcaaatatttcaagatttgctaggaactgatcaggat
aaccttgatttggccaatgtcaaccttatgttggaattactggtgcagaagaagaaacaa
ctggaagctgaatcacatgcagctcaactacagatccttatggaattcctgaaggttgca
aggagaaataagagagagcaattggaacagatccagaaggaactaagtgttttggaagaa
gatattaaaagagtggaagaaatgagtggcttgtactctcctgttagtgaagatagcaca
gtgcctcagtttgaagctccttctccatcacacagtagtattattgattctacagaatac
agccaaccttcaggtttcagtgggacttctcagacaaagaaacaaccttggtataacagc
acattagcatccagacgaaagcgactcactgctcattttgaagacttagagcagtgttat
ttttctacaaggatgtctcgtatctcagatgacagtagaactgcaagccagttagatgaa
tttcaggaatgtctatccaagtttactcgatacaactctgtaagaccattggccacattg
tcatatgctagtgatctctataatggttccagcatagtatctagtattgaatttgaccgg
gattgtgactattttgcaattgctggggtaacaaagaagattaaagtctatgaatatggc
acagtcatccaggatgcagtagatattcattaccctgagaatgaaatgacctgcaattcc
aaaatcagctgtatcagttggagtagttaccataagaatctgctagccagcagtgattat
gaaggcactgttattctgtgggatggattcacaggacagaggtcaaaggtctatcaggaa
catgaaaagaggtgttggagtgttgactttaatttgatggatcctaaacttttggcttca
ggttctgatgatgcaaaagtgaagctgtggtctaccaatttagacaattctgtggcaagc
attgaggcaaaggctaatgtgtgctgtgtgaaattcagcccctcctccagataccatttg
gcttttggctgtgcagatcactgtgttcactactacgatctccgtaacactaaacagcca
ataatggtattcaagggacacagaaaagcagtctcatatgccaagtttgttagtggtgaa
gaaattgtctctgcctcaacagacagccaactaaaactgtggaatgtggggaaaccatat
tgtttgcgttccttcaagggtcatattaatgaaaaaaactttgtaggacttgcttccaat
ggagattatatagcttgtggaagtgagaacaactccctctacctgtactataaaggactt
tctaagactttgctgacatttaaatttgatacagtcaagagtgttctggacaaagaccgg
aaagaagatgatacaaatgaatttgtcagtgctgtgtgttggcgggcactatcagatggg
gagtccaatgtgctgattgctgctaacagccagggtacaattaaggtgctagagttggtg
taa
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integrated database retrieval system
