Phodopus roborovskii (desert hamster): 127223468
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Entry
127223468 CDS
T08852
Symbol
Rc3h1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
prob03000
]
127223468 (Rc3h1)
04121 Ubiquitin system [BR:
prob04121
]
127223468 (Rc3h1)
Transcription factors [BR:
prob03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
127223468 (Rc3h1)
Ubiquitin system [BR:
prob04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127223468 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
TPD52
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
127223468
NCBI-ProteinID:
XP_051042030
UniProt:
A0AAU9Z9I8
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQIPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAPILPDE
SAVDLSSRKPPTLPNGIVSTGATVTQLIPRGTDPSYDSSLKPGKLDHLSSSAPGSPPDLL
ESAPKSISALPVNPHPVPPRGPTDLPPMPVTKPIQMVPRGSQLYPPQQADVYYQDPRGTA
PAFEPSPYQQGMYYPPPPCVSRFVRPPPSAPEPGPPYLDHYPPYLQDRVINSQYGTQPQQ
YPPMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPSAAVPSYVPESRERYQQVEGYYPV
APHPAQIRPSYPREPPYSRLPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTL
PPAFHQEEFLDEEFKVAGKYKANDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMN
VDSKGMRDQRLDLQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPMQAMAPQ
GAPTKPISISDYSPYGAHGGWGDSPYSPHPNIPPQGHFIEREKMSMAEVVSHGKPLLSAE
REQLRLELQQLNHQISQQTQLRGLEAVNNRLVLQREVNTLAGQPQPPPLPPKWPGMISSE
QLSLELHQVEREIGKRTRELSMENQCSMDMKSKLGTSKQAENGQPDPQNKVPAEDLTLTF
SDVPNGSALTQENLSLLSNKTSSLNLSEDPEGGGDNNDSQRPGVTSSSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctttcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaaaatg
tgcctgaataaactccaccgtaaggcttgcccatttgaccagaccactatcaatacagac
attgagctccttcctgtgaactcagcattactgcagctagtgggtgctcagatccctgag
caacagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcattgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaacagcactactcaaagtgttctgagtcgcccaatgcagaggaagcttgtgactcta
gtccactgccagctagtggaagaagaaggcaggatccgtgctatgagggctgctcgatct
ttaggtgaacgcacagttacagagctcattctccagcaccaaaatcctcagcaactctcc
tctaatctctgggcagccgtcagagctaggggctgccagttccttggaccagcaatgcag
gaggaagctctgaaacttgtcttgctggctttggaagatggttctgctttgtcacggaaa
gtgttggttctctttgtggtgcaaagactggagcctcgttttcctcaagcctctaaaacc
agcattggacatgttgttcagctcctttacagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaggaagaatttaggacttatgaagctctgcga
cgagaacatgactcccagatagtacaaattgctatggaagcaggcttaaggattgcacca
gaccagtggtcctctttgctttatggagaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagacccctgcctcttttgcacagagtgttcaggagctaactattgct
ctccagcggactggagacccagcgaacttgaaccgactaagaccccacttggagctacta
gcaaacattgaccctagtccagatgcacctcctccaacctgggaacagttagaaaatggc
ctggttgctgtacgtacagtagtacatggactagttgattatattcagaaccacagcaaa
aaaggagcagaccagcagcagcctccacagcatagcaaatacaaaacatacatgtgtcga
gatatgaagcagaggggaggatgccctcgtggggccagctgtacattcgcacactcacaa
gaagaactggaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacctctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcacctatacttcccgatgaa
agtgcagtggacttgtccagcaggaagccgcctacactaccaaatgggattgtatcgaca
ggggccacagtaacacagctgattccacgtgggacagaccccagctacgattctagtctg
aagccagggaagctggaccacctgagcagcagtgctcctgggtcccctcctgacctgctg
gagtctgcccctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
ggaccaacagatctgcctcccatgcctgtcaccaaaccaattcagatggtacctcgaggt
tctcagttatatccaccacaacaagcggatgtttattatcaggatcctcgaggaactgcc
ccagcatttgagccatcaccttatcagcagggcatgtactatcctccaccaccatgtgtg
tcccgctttgtacgacctccaccatctgctcctgaacctggtcctccatacttggatcat
tatccaccctacctccaagatcgtgtcataaactctcagtatggcacacagccacaacag
taccctcctatgtacccacctcactatgatggccgtcgtgtataccctgctcagtcttat
acaagagaggagattttccgggaaagccctatacccattgagattccatctgcagcagta
ccatcctatgtgccagaatccagagaacgataccaacaggtagagggttactatccagtg
gctcctcatccagctcagattagaccttcatatcccagggagcctccttatagtcggctt
cctcctccccaaccccatcctagtctggatgagctacatcgtagacggaaggaaataatg
gcccaactagaggaaagaaaggttatctctccacctccttttgcgccttcaccaacactg
cctcctgcgttccatcaagaggaatttttggatgaagaattcaaggtagctggaaagtac
aaagcaaatgattatagccagtattctccttggtcatgtgataccatcggctcctacatt
ggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatgatgaat
gtggacagtaaaggaatgagagaccagagattggatcttcagagaagagcggtggaaact
agtgatgatgacctcatcccatttggagaccgaccaacggtatctcggtttggtgccatc
tctcgaacatccaaaacactttatcagggtgctggcccaatgcaggccatggcgccacag
ggagcacccacaaaacctattagcatttcagattatagtccatatggagctcatggtggc
tggggagattctccatactcacctcatccaaacatacctcctcagggacacttcatcgag
agggagaaaatgtccatggcagaagtggtcagtcatggcaaaccccttctgtctgctgaa
agagagcaactacggctggaattgcagcaactgaaccatcagatcagccagcagacccag
cttcgtggactagaggctgttaataaccgactggtgttacagagggaggtgaacaccctg
gcaggccagccacagccccctccactgcctccaaaatggcctggaatgatctccagtgag
cagctaagcttggaactacatcaggtggaaagggaaattggcaagagaacccgggaattg
agtatggagaaccagtgttcgatggacatgaaaagcaaactgggtacaagtaagcaagca
gaaaatgggcagccagacccacaaaacaaagtcccagctgaagaccttacattgacattc
agtgatgtaccgaatggatcagctttgacacaagagaatctcagcctcctatcaaacaag
accagctctttgaacctgtcagaagaccccgagggaggaggagataacaatgattctcag
agaccaggagttacttccagttctgctccctag
DBGET
integrated database retrieval system
