Phodopus roborovskii (desert hamster): 127223752
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Entry
127223752 CDS
T08852
Name
(RefSeq) putative ATP-dependent RNA helicase Pl10
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04622
RIG-I-like receptor signaling pathway
prob05161
Hepatitis B
prob05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
127223752
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
127223752
09172 Infectious disease: viral
05161 Hepatitis B
127223752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127223752
03041 Spliceosome [BR:
prob03041
]
127223752
03036 Chromosome and associated proteins [BR:
prob03036
]
127223752
Enzymes [BR:
prob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127223752
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127223752
mRNA cycle factors
Common to processing body (P body) and stress granule
127223752
Spliceosome [BR:
prob03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
127223752
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
127223752
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127223752
NCBI-ProteinID:
XP_051042482
LinkDB
All DBs
Position
Unknown
AA seq
670 aa
AA seq
DB search
MSHVAEEDELGLDQQLAGLDLNSAPDSQGGGGATSKGRYIPPHLRNREAAAAAAAKAAYD
KDGGARWSKDKDAYSSFGSRSDARAKSGFFGGDRGAGSRGRFDSDRGPRSEYEGPGGRGG
RSGFGKFERGGGSSRWCDKADEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEAT
GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT
AAFLLPILSQIYTDGPGEALRAVKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSY
RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR
MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGST
SENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSI
HGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR
TGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGGSRGRSKSR
FSGGFGARDYRQSSGASSSSFSSSRASNSRSGGGSHGSSRGFGGGSYGGFYNSDGYGGNY
SSQGVDWWGN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcggaggaagacgagctcgggctggaccagcagttggccgggctggac
ctgaactctgccccggacagccagggcggcggcggcgccaccagcaaagggcgctacatc
cctcctcacctccgcaaccgggaggcggcggcggcggcggcggcgaaggcggcctacgac
aaagacggcggcgcacggtggagtaaagacaaggacgcctacagcagcttcggctcccgg
agcgacgcgagggccaagtccggcttcttcggcggcgaccgtggggccggctcgaggggg
aggtttgactcggaccgggggccccggagtgagtacgagggccccggcggccgcggcggg
aggagcggcttcggcaagtttgaacgcggtggcggcagcagccgctggtgcgacaaggcg
gacgaggacgactggtccaagccgctgccgcccagcgagcgcctggagcaggagctcttc
tccggaggcaacacgggcatcaactttgagaagtacgacgacatcccggtcgaggcgacg
gggaacaactgccccccgcacatcgaaagcttcagcgacgtggagatgggggagatcatc
atgggcaacatcgagctcacccgctacacgcgcccgacccccgtgcagaagcacgccatc
cccatcatcaaggagaagagggacttgatggcttgtgcccagacggggtccgggaagacg
gcggcgtttctcttgcccatcctgagtcagatctacacggacggacccggcgaggccttg
cgggccgtgaaggagaacggcaagtacgggcgtcgcaaacagtaccccatctccctggtc
ctggctccgacccgagaactggcggtgcagatctacgaggaggccaggaagttctcgtac
cgctctcgggttcgcccctgtgtggtgtacggtggcgccgatatcggtcagcagattcga
gatctggaacgtggatgccacttgttagttgccaccccgggacggctggtggacatgatg
gagcgagggaagatcggactagacttctgcaaatacttggtgttagacgaagcggaccgg
atgttggacatgggctttgagcctcagatacggagaatagttgagcaagacaccatgcct
ccaaaaggtgtccgccacactatgatgtttagtgccacttttcccaaggaaatacagatg
ctggctcgagatttcttggatgaatatatctttctggccgtaggacgagtcgggtctact
tcggagaacatcacacagaaagtcgtgtgggtagaagaagcagacaagcggtcgtttctg
ctcgacctcctgaatgcaaccggaaaggattccctgatactggtgtttgtggagaccaaa
aagggtgccgattctctggaggatttcttataccatgaaggatatgcttgtaccagtatc
catggagatcgatcacagcgagacagggaagaggcccttcaccaattccgatcaggaaaa
agtccaattctcgtggccacagcagtagcggcaagaggactggatatttccaatgtgaaa
catgtcatcaattttgacttgcctagtgacatcgaagaatatgtgcaccgaattggtcgt
acaggtcgtgttggaaaccttggccttgccacctcgttcttcaatgagaggaacataaat
attaccaaagatttattggatcttctcgttgaagctaagcaagaagtgccatcttggcta
gaaaacatggcttttgaacaccattacaagggtggcagtcgtggacggtccaagagcaga
tttagcggagggtttggtgccagagactatcgacaaagtagcggtgccagcagttccagc
ttcagcagcagccgggctagcaacagtcgcagtggcggaggcagccacggcagcagcaga
gggtttggtggaggtagctatggaggcttttacaacagtgatggatatggaggaaattat
agctcccagggggtagactggtggggtaactga
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