Phodopus roborovskii (desert hamster): 127224004
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Entry
127224004 CDS
T08852
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
127224004 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
prob00536
]
127224004 (Col13a1)
Glycosaminoglycan binding proteins [BR:
prob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127224004 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127224004
NCBI-ProteinID:
XP_051042706
LinkDB
All DBs
Position
Unknown
AA seq
640 aa
AA seq
DB search
MGPTGRPGLPGDKGAIGMPGRMGVKGQPGEKGAPGDAGMSIIGPRGPPGQPGTRGFPGFP
GPIGLDGKPGHPGPKGETGLVGPRGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPV
IKRRTFQGEQGQAGIQGPPGPPGPPGPSGPLGHPGLPGPIGPPGLPGPPGPKGDPGIQGY
HGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGTPGAKGDKGATGSPGLSGLLGQKGEK
GDSGNAIGGGRGEPGPPGLPGPPGPKGEAGVNGQAGPPGQQGDKGQPGAAGEQGPAGPKG
SKGEPGKGEIVDYNGNINEALQEIRTLALMGPPGLPGQTGPPGPPGSPGQRGEIGLPGPP
GHDGDKGPRGKPGDMGPVGPQGPPGKDGPPGMKGEAGAPGSPGEKGETGQAGPQGLDGPT
GEKGEPGDEGRPGATGLPGPIGLPGFTGEKGEAGDKGDPGAEVPGPPGPEGPPGPPGLQG
VPGPKGEAGLDGSKGEKGSQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG
ERGSKGDPGMTGPMGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCP
LGHRGFKGEKGEPGLPGLDGLDAPCPLGEDGLPVQGCWNK
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgggccccactggaagacctggactccctggggacaagggtgccatcgggatgcctgga
cgcatgggtgtcaaaggtcaaccaggagagaagggcgctcctggagatgcagggatgtcc
atcatcgggcctcgaggcccccctggccagccgggcactcgaggcttccctggatttccg
ggtcccattggtcttgatggcaagccgggccaccccggacctaaaggggagacgggcctg
gtgggtccccgaggacagccgggccctcagggacaaaagggagaaaagggtcagtgtggc
gagtacccacaccggctgttgcctctcctcaattctgtgcggctggctccacccccagtc
attaaaaggcggacctttcagggggaacaaggccaggctggcatccaaggccctccaggg
ccaccaggccccccaggaccaagtggccctctgggacacccaggactgccagggcccata
gggccccctggtttacctgggcctcctggaccaaagggagacccagggatccagggctac
catggccgcaagggagagcggggcatgccggggatgccgggcaagcacggagccaagggg
gctcctgggattgctgtggctggaatgaagggcgagccagggactccaggagccaagggt
gacaagggggctacaggctcccctgggctctccggcctcttggggcagaagggagaaaag
ggtgattcaggcaatgccattggaggaggcaggggggagcctggccccccagggctccct
ggaccccctgggccaaagggagaagctggtgtcaatggccaggctgggcccccaggacag
caaggagacaaggggcagccaggagcagctggggaacaaggaccagctggccccaagggc
tccaagggtgaacctggcaagggagagattgtggattacaatggaaacatcaacgaggca
cttcaggagatcagaacactggccttgatgggtcctcctggtcttcctggacaaacaggg
ccacctggacctccagggagtccaggccaaaggggagagattggactgccaggccctcca
ggacacgatggggacaagggacctcgaggaaaaccaggagacatggggccagttggcccc
caaggacccccaggaaaggatgggcctccaggaatgaagggagaggctggagccccaggg
agccccggggagaaaggggaaacaggacaagcaggcccccagggtctagacggcccaact
ggggagaaaggagaaccaggtgacgaagggaggcccggagcgacaggattacctgggccc
atcgggctcccgggattcacaggagagaaaggagaagctggggacaaaggtgacccagga
gcagaggttcctgggccaccagggccagaggggcctccaggacctccgggcctccaaggt
gttcctggaccaaagggagaagcaggcctggatggctccaaaggagagaagggttcccag
ggagaaaaaggagaccgggggcctctgggtctgcctggagcttcaggtttggacggcagg
cctgggccaccgggtactccaggaccaatcggagttccaggcccagccggaccaaaagga
gagcggggcagcaaaggagacccagggatgacaggaccaatgggagctgcagggcttcct
ggtttacatggaccacccggggacaaaggaaaccggggggaaagggggaagaaaggctct
agagggcctaaaggggataaaggggaccaaggagcacctggactagacgccccctgcccg
ctgggccaccgaggttttaaaggagagaaaggggagccggggctaccagggctggacgga
ctggatgccccatgcccactgggagaagatggcttaccagtccaaggctgctggaacaag
tga
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