Phodopus roborovskii (desert hamster): 127224134 Help Entry 127224134         CDS       T08852                                  Symbol Col18a1 Name (RefSeq) collagen alpha-1(XVIII) chain   KO K06823   collagen type XVIII alpha Organism prob  Phodopus roborovskii (desert hamster) Pathway prob04974   Protein digestion and absorption Brite KEGG Orthology (KO) [BR:prob00001]  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     127224134 (Col18a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:prob04147]     127224134 (Col18a1)    00535 Proteoglycans [BR:prob00535]     127224134 (Col18a1)    00536 Glycosaminoglycan binding proteins [BR:prob00536]     127224134 (Col18a1) Exosome [BR:prob04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    127224134 (Col18a1) Proteoglycans [BR:prob00535]  Extracellular matrix (ECM) proteoglycans   Basement membrane proteoglycans    127224134 (Col18a1) Glycosaminoglycan binding proteins [BR:prob00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    127224134 (Col18a1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Endostatin Collagen DUF959 Collagen_trimer Laminin_G_3 Laminin_G_2 DUF7693 Motif Other DBs NCBI-GeneID:  127224134 NCBI-ProteinID:  XP_051042928 LinkDB All DBs Position Unknown AA seq 1511 aa AA seqDB search MAPDPSRRLWLLLLLLSCCLEPARPDRNHLNPLNPLSPLVWLWSTKTHDPLSEPQISSPV EPTESPTTHVVPQDGLALQQMAPANPKLSPEDQEAGQSGTPTTATIPIPPMASAASSDMK EENVAGVGAKILNVAQGIRSFVQLWDENTATENSAGIEPSASSIPTILLTPTEFSSAPQE GETTLWLSGGVSSSPDVQTTEPGTLAVPTQPPPSLSSLQAPLRRPSVPPAPPENVAEEVG LPQLLGDPLPRQISQIDDPHVGPAYMFEQDSSSGQMAQYHFPRLYFRDFSLLFHIQPATE AAGVLFAITDAAQEVVLLGVKLSGVQGGHQNISLLYTEPSASQTQTGASFHLPAFVGQWT HFALSVEGSSVALYIDCEEFQRVQFARSPQGLELERGSSLFVGQAGAADPDKFQGKISEL KVRQNPRVSPVLCLDEDDDDEDRASGDFGSGFEESSKPPREEDISLAPRLPQPPPVTSPP LAGGSTTEDSRTEETEEETVVDSIGAGTDSRGKWDESVQNHGGDLIKGGLKGQKGEPGAP GLPGPIGPQGPAGPVVQSPSAQPVPGAQGPPGPQGPPGKDGAPGRDGEPGDPGEDGRPGD TGPQGFPGTPGDMGPKGEKGDPGVGARGPPGPPGPPGPSFRQDKLTFIDMEGSGFSGDLE SLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSYAPGPAGLPGVPGKEGPPGFPGPPGPQG PPGKEGPPGVAGQKGNAGEVGIPGPKGSKGDLGPVGVPGKTGMAGPPGPTGPPGPPGPPG PPGPGFAAGFDDMEGSGIPFWSTARSTDGLQGPPGLPGLKGDPGVKGPPGAKGEVGADGV QGIPGLPGREGAAGPPGPKGEKGTQGEKGNPGKDGVGLPGLPGPPGPPGPVLYVSNEDRA VVGTPGPEGKPGYAGFPGPAGPKGDLGSKGEQGLPGPKGEKGEPGAIFGPDGRALGHAQK GAKGEPGFRGPPGPYGRPGHKGEMGFPGRPGRPGTNGLKGEKGEPGDASLGFSMRGPPGL PGPPGPPGPPGMPIYDSNAFVESGQPGLPGQQGVQGPSGPKGDKGEVGPPGPPGQFPIDF FHLGAEMKGDKGDRGDTGQKGERGEPGAAGGGFFSSSVPGPPGPPGYPGIPGPKGESIQG PPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPPGPPGPPGAMG ASAGVRIWATYQTMLDKVREVPEGWLIFVAEREELYVRVRNGFRKVLLEARTPLPHKTGN EVAALQPPLVQLHEGSPYTRREYSYSTARPWRADDILANPPQPYPGVPHHHSSYVHLPPA HPTGSPTHTHHDFQPVLHLVALNSPLSGGMRGIRGADFQCFQQARAVGLAGTFRAFLSSR LQDLYSIVRRADRGTVPIVNLKDEVLSPSWDALFSGSQGQLQPGARIFSFDGRDVLRHPA WPQKSVWHGSDPGGRRLMESYCETWRTEATGAIGQASSLLSGRLLEQRTASCHNTYIVLC IENSFMTSFSK NT seq 4536 nt NT seq  +upstreamnt  +downstreamnt atggctcccgaccccagcagacgcctctggctgctgctgctgttgctctcctgctgcctc gagcctgccagacctgaccggaatcacctgaaccccctgaatcccctgagtcctctggtg tggctgtggtccaccaagacccatgatccgctctccgagccccagatcagttcacctgtg gaacccacagagagccccaccacgcacgtggtcccccaggatggcctcgcattacagcag atggctcctgccaaccccaagctgtccccggaggatcaggaagctggccagagtgggacc ccgacaaccgcaaccatccccatccccccgatggcctctgccgcgagctcagacatgaag gaggagaatgttgctggcgttggagccaagattctgaatgtggcccagggcattcggagc ttcgtccagctgtgggatgagaacacagctaccgagaactcggctgggatagaaccctca gcttcctccatccctaccatcctcctcactcctactgagttctccagcgccccccaggag ggtgagaccaccctctggctaagcggtggtgtttcaagttctccagatgttcagacaact gagcctggcaccctagctgtgccgacccagccacctccctccctgagcagcctccaggca ccactgagaagaccctcagtgccaccagcacccccagagaatgttgctgaggaggtgggg ctgccacagctcctcggggaccctctgccccggcagatctcacaaatcgatgaccctcac gtcgggccagcctacatgtttgaacaggactccagcagtggccagatggcccagtaccac ttccctagactctacttccgtgacttttccctcctgtttcatattcagccggccacagag gctgcaggggtgctgtttgccatcacagatgctgcacaggaggtggtgttgctgggtgtg aagctttcgggggtgcagggtggacaccaaaacatctcattactctacacggagcccagt gccagccagacacagacaggtgccagtttccacctacctgcatttgttggccagtggaca cattttgcactcagcgtggaaggaagctctgtggctctctacatagactgcgaagagttc cagagagtgcagtttgcgcggtccccacagggtctggagctggagcgtggctctagcctc tttgtgggccaagctggagcagctgaccctgacaagtttcaggggaagatctcagagctg aaggtacgacagaatccccgggtgagccctgtgctctgcctggatgaagatgatgatgat gaagatagggcatctggagattttggaagtggctttgaagaaagcagcaagccacccagg gaggaggatatatctctagcacccaggctcccccagccaccccctgtcacctccccgccc ctggctggaggcagcaccacagaagattctagaacagaagaaacagaagaagaaaccgtg gtagattctataggagctggcacagattcaagaggtaaatgggatgagagtgtccagaac cacggaggtgatttgataaagggaggtctgaaaggacaaaagggggagccaggtgctccg ggcctacctggcccaattggtccccaaggtcctgcaggcccagtggtacagagccccagt gcacagcctgtccctggagcacaaggacccccaggacctcaggggccaccagggaaggat ggcgctccaggaagggatggtgaaccgggtgaccctggtgaagacgggaggccgggtgac actgggcctcaaggctttccagggaccccaggagacatgggccccaagggtgagaaggga gatcctggtgtcggagcacgaggacctccagggccaccagggccaccaggaccctccttc agacaggacaagctgaccttcattgacatggaagggtccggtttcagcggagatctggag agcctcagaggcccacgaggcttccctggccccccaggaccccctggtgtcccaggactg cctggtgagccagggcgctttggggtcaacagctcctatgctccaggacctgcaggcctt cctggtgtgcctggaaaggaagggcctcctggattccctggtcccccgggacctcaaggt cctccaggcaaagagggcccaccaggagtggctggccagaaaggcaatgctggcgaggtg ggcatcccaggacccaaggggagcaaaggagaccttgggcctgtcggtgtacctgggaag actggcatggctggaccccctgggccaactggacccccaggaccaccagggccaccaggg ccaccaggaccaggatttgctgctggatttgatgatatggaaggctctgggatacccttc tggtcaacagctcgaagcactgatgggctgcagggacctccagggttgccaggactcaag ggggatcctggagtgaaagggccacctggagccaagggagaagtcggagcagacggagtc cagggcattcctggcctcccaggaagagagggtgcagctgggcccccgggaccaaaagga gagaaagggacccagggagagaagggaaacccaggaaaagatggagtggggctgccaggc ctccctggccccccaggacctccagggcctgtgctctatgtgtcgaatgaagatagagca gtagtgggcacgccaggacctgagggcaagccagggtacgcaggctttcctggacctgct gggccgaagggtgacctgggttccaaaggcgagcagggtcttccaggacccaagggtgaa aagggagagccaggcgctatctttggccctgatggcagagccctgggccatgcacagaaa ggagccaagggagaaccaggcttccgaggacccccgggtccttatggacggcctgggcac aagggtgaaatgggcttccctggacggccgggtcgtcctggaacaaatgggttaaaggga gagaaaggagagcccggagatgccagccttggtttcagcatgaggggaccaccaggtctc cctggacctccaggacccccgggtcctcccgggatgcccatctatgacagcaatgcgttt gtggagtctggccaacctggactaccaggacagcaaggtgtgcagggaccttcaggacca aagggtgacaaaggagaggtgggcccacctgggcctccagggcagttccccatcgatttc ttccacctgggagcagaaatgaagggtgacaagggggaccgaggagacactggacagaaa ggagagaggggagaacctggggctgctggaggtggattcttcagctcaagtgtacctgga ccacctggcccccctggctaccctgggattccgggtccaaagggagaaagcatccagggc ccacctggccctcctggtcctcagggacctcctggcattggctatgaggggcgccagggg cccccaggacctccaggacctccaggacctccctccttccctggccctcataggcagact gtcagtgttcctggtcctccgggtccccctggccccccaggtcccccaggagccatgggt gcctctgctggggtgaggatctgggccacataccagaccatgctggataaggtgcgcgag gtgcccgagggctggctcatcttcgtggctgagagggaagaactctacgtacgtgttaga aatggcttccggaaggtgctgctggaggcccggacaccactcccacacaagacgggcaac gaggtagcagctctgcagcccccactggtgcagcttcatgagggcagcccatatactcgg cgggagtactcatattccacagctcggccctggagggcagatgacatcctggccaaccca ccacagccttaccccggagtcccacaccaccacagctcctatgtgcacctgccgccagct caccccacaggctcgcctactcacactcaccatgacttccagccagtgctccacctggtg gcactgaacagcccactgtcaggtggcatgcgtggcatccgtggggccgatttccagtgc ttccagcaggcccgagccgtaggcctggctggcaccttccgtgccttcttatcctctagg ctgcaggacctctacagtattgtgcgtcgtgctgaccgtgggactgtgcccatcgttaac ctcaaggacgaggtgctatctcccagctgggacgctttattttctggctcccagggtcaa ctgcagcctggggcccgcatcttttcttttgatggcagagatgtcctgagacacccagcc tggcctcagaagagcgtgtggcatggctcagaccccggcgggcgcaggttgatggagagc tactgtgaaacatggcggacggaggcgacaggggctataggtcaggcctcctccctgctg tcaggcaggctgctagaacagagaactgcgagctgccacaacacctacatcgtcctgtgc attgagaatagtttcatgacctctttctccaagtag

DBGET integrated database retrieval system