Phodopus roborovskii (desert hamster): 127224352
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Entry
127224352 CDS
T08852
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03013
Nucleocytoplasmic transport
prob03015
mRNA surveillance pathway
prob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127224352 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
127224352 (Ddx39b)
03015 mRNA surveillance pathway
127224352 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127224352 (Ddx39b)
03041 Spliceosome [BR:
prob03041
]
127224352 (Ddx39b)
Enzymes [BR:
prob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127224352 (Ddx39b)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127224352 (Ddx39b)
Spliceosome [BR:
prob03041
]
Complex C
Other components
EJC/TREX
127224352 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127224352 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127224352
NCBI-ProteinID:
XP_051043321
UniProt:
A0AAU9ZEI3
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggacaatgagctcttggactatgaagatgatgaagtggagaca
gcagcagggggagatgggactgaagctcctgccaagaaagatgtcaagggctcctacgtc
tccatccacagctccggctttcgagacttcctgctcaagccagagttgctccgggccatc
gttgactgtggctttgagcatccatcagaggtccagcatgaatgcatccctcaggccatt
ctggggatggatgtcctgtgccaggccaagtcaggcatggggaagacagcagtgtttgtc
ctggccacattacagcagctggagccaatcactgggcaggtgtctgtgctggtgatgtgt
cacactagagagttggcttttcagatcagcaaggaatatgagcgattctcaaagtatatg
ccaaatgtcaaggtggcagtgttctttggcggtctgtctatcaagaaggatgaagaggtg
ttgaagaagaattgtccacacatcgttgtggggactcccggccgaattctagccctggct
cgcaataagagcctgaaccttaagcacattaaacactttatcttggacgaatgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccgc
aagttcatgcaagatcctatggagatcttcgtggatgatgagaccaagttgacgctgcac
gggttgcagcaatactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtcctcgagttcaaccaggtggtgatctttgtgaagtctgtgcagcggtgc
atcgccctggcccaacttctggtggaacagaacttcccagccattgctatccaccgtggg
atgccccaggaggagaggctctctcggtatcagcagttcaaggatttccaacggcggatt
cttgtggctaccaacctgtttggccgaggcatggacattgagcgtgtgaacattgccttc
aactatgacatgccagaggactcagacacctacctgcatcgggtggccagagcaggccgg
tttggtaccaagggcttggccatcacttttgtgtcagatgagaacgatgctaagatcctc
aatgatgttcaggaccgctttgaggtcaacatcagtgagctccccgatgagatcgacatc
tcctcctacattgaacagacacggtag
DBGET
integrated database retrieval system
