Phodopus roborovskii (desert hamster): 127224579
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Entry
127224579 CDS
T08852
Symbol
Vcp
Name
(RefSeq) LOW QUALITY PROTEIN: transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04137
Mitophagy - animal
prob04141
Protein processing in endoplasmic reticulum
prob05014
Amyotrophic lateral sclerosis
prob05022
Pathways of neurodegeneration - multiple diseases
prob05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
127224579 (Vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
127224579 (Vcp)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
127224579 (Vcp)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127224579 (Vcp)
05022 Pathways of neurodegeneration - multiple diseases
127224579 (Vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127224579 (Vcp)
03009 Ribosome biogenesis [BR:
prob03009
]
127224579 (Vcp)
04131 Membrane trafficking [BR:
prob04131
]
127224579 (Vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
prob04147
]
127224579 (Vcp)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
127224579 (Vcp)
Ribosome biogenesis [BR:
prob03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
127224579 (Vcp)
Membrane trafficking [BR:
prob04131
]
SNARE
SNARE associated proteins
Others
127224579 (Vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
127224579 (Vcp)
Exosome [BR:
prob04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
127224579 (Vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
AAA_28
Vps4_C
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
DUF3944
Zot
Motif
Other DBs
NCBI-GeneID:
127224579
NCBI-ProteinID:
XP_051043575
LinkDB
All DBs
Position
Unknown
AA seq
806 aa
AA seq
DB search
MASGADSKGDDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK
GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRXKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV
INQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN
LRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAM
EVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSGNQGG
AGPSQGSGGGTGGSVYTEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctctggagccgattcaaaaggagatgatttgtcaacagccattcttaaacaaaag
aaccgtcccaatcggttaattgttgatgaagctatcaatgaagataacagcgtggtgtcc
ttgtcccagcccaagatggatgaactgcagttgttccgaggtgacacagtgttgctaaaa
ggaaagaagagacgggaagctgtgtgtattgtactttctgatgatacatgttctgatgag
aagattcggatgaatagagttgttcggaataacctccgtgtccgcctaggggatgtcatc
agcatccagccatgccctgatgtaaagtatggcaaacgtatccacgtgctacccattgat
gacacggtggaaggcatcactggcaatctttttgaggtataccttaagccgtatttcctg
gaagcttatcgccccatccgcaaaggagatattttccttgtccggggtgggatgcgtgct
gtggagttcaaagtagtagagacagatcccagcccttactgtattgttgctccagacaca
gtgatccactgtgaaggagagccaattaagagagaggatgaggaagaatctttgaatgaa
gtaggctatgatgacattggtggctgcaggaagcagctagctcaaataaaggagatggtg
gaactgccactgagacatcctgcactctttaaggcaattggtgtgaagcctcctcgggga
atcttgctatatggacctcctgggacagggaaaaccctgattgcccgagctgtggcaaat
gaaactggagccttttttttcctgataaatggtcctgagatcatgagcaaattggctggt
gaatccgagagcaaccttcgtaaagcctttgaggaagctgaaaagaatgctcctgctatc
atcttcattgatgagcttgatgccattgcacccaaaagagagaaaactcatggggaagtg
gagcgtcgtattgtgtctcagttgttgacccttatggatggcctaaagcagagagcacat
gtgatagttatggcagcaaccaatagacccaatagcattgacccggccctacggcgattt
ggtcgctttgacagagaggtagatattggaatccctgatgctacaggacgcttggaaatt
cttcagatccacaccaagaacatgaaactggcagacgatgtggacttggaacaggtagcc
aatgagactcatggccatgtaggtgctgatttggcagccctgtgttcagaggctgctctt
caggccatccggnaaaaaatggaccttattgatcttgaggatgagaccattgatgctgag
gtcatgaattccttggcagttactatggatgatttccggtgggccttgagtcaaagcaac
ccatcagcacttcgggaaactgtggtagaggtgccacaagtaacctgggaggacattgga
ggcttggaagatgtcaaacgggagcttcaggagctggttcagtatcctgtggagcatcca
gacaaattcctcaaatttggaatgaccccttccaaaggtgttctcttctatggacctcct
ggctgtgggaagaccttgctggccaaagccattgctaatgaatgccaggctaacttcatc
tccattaagggtcctgagctgctcaccatgtggtttggggaatctgaggccaatgtcagg
gaaatttttgacaaggcacggcaagctgccccctgtgtactcttcttcgatgagttagat
tcaattgccaaggctcgtggtggtaatattggagatggtggtggagctgctgaccgagtc
attaatcagatcctgacagaaatggatggcatgtccacaaaaaagaatgtgtttatcatt
ggagctaccaaccggcctgacattattgaccctgctatcctaagacctgggcgtcttgat
cagcttatctatatcccacttcctgatgagaagtcccgtgtcgccatcctgaaagctaac
ctgcgcaagtccccagttgccaaggatgtggatttggagttcctggctaagatgacaaat
ggcttttctggagctgatctgacagaaatttgccaacgtgcttgtaaactggccattcgt
gaatctattgagagtgagattaggcgagaacgagagaggcagacaaatccatcagctatg
gaagtagaagaggatgatccagtgcctgaaatccgcagagaccactttgaagaagccatg
cgctttgcccgtcgttctgtcagtgataatgacattcggaagtatgaaatgttcgcccag
acacttcagcaaagtcgaggtttcggcagcttcagattcccttcagggaaccagggtgga
gctggccccagccagggcagtggaggtggcacaggtggcagtgtgtacacagaagacaat
gacgatgacctgtatggctaa
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