Phodopus roborovskii (desert hamster): 127224736
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Entry
127224736 CDS
T08852
Symbol
Shoc1
Name
(RefSeq) LOW QUALITY PROTEIN: protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
prob03036
]
127224736 (Shoc1)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Meiosis-specific proteins
Others
127224736 (Shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5587
DHquinase_II
Motif
Other DBs
NCBI-GeneID:
127224736
NCBI-ProteinID:
XP_051043821
LinkDB
All DBs
Position
Unknown
AA seq
1520 aa
AA seq
DB search
MAAQNSRENRLLRRGLRGPAGMRSRIQLLSHLVRGSREYEGPGRPILNCVTLKGRAMFSA
FKYYAIDYLHENTVKEKLYKDALLLQIPSCLNQDKNFIDDKYRSPWTRAISAPEMTDNSL
LEQWTTRFCVEDIPEKKTVTGMMINGTFEEIVPSSNPNSPTGIENVSSYPSKDHREDFTP
IKCSPYYPGVKAEHQGLLIDEEMIFINKAVDNHLPTVDTLLSRLKLYLVKDPLLDFKEQL
SGKDNFTECFSVQERLEPFVRDFHMVEETFCKKKLPSVFPSEYEFLISTNPKQEIPILPS
SKLKESMSEIMDYVDENEKLFKRDLSTKHEFDTDDMKCNSTEILPIASPREPECNKPGEL
EISPTNLSLPRQYSSVSSLCAGFHTFPFSAVCKINLLSAGESTNRYCMLWQLGSCRNSWV
SFLLTVPRLQEPSGQYSLADMRSIFSIKGDSLVINPAKAKRWRQARLNPIMAETLEHLKA
YLCHNGLSSKETKLEIFLPTKVLQLESWLEHQSRPLPIMPKSDKSTNVQRLRPQKRPSSE
KQVPHLLLSDECVSVKKPKTEENPKNNQEVASKIMQNTDSSRVGLDNSVPFVEPTSSSWI
KASYDKKQNDLDLLSEFITLRSKDKPSTSDDEVTGHDQNNEFQDKEKCSSTLQEESPIVS
NNKTPEERFQERTDDVIEIQASDTQCQAYYLLEAAATPVLKKLACLCTYPAADWKFATVI
FDQTRFFLKEQEKIINDAVHQGKTDDREITFRHAAFLHLLVTIRDALLTCSLDTALGYLS
NAKDIYKSMLDSCLDNIWRQLKILQFIXRKRPKPNYKIEELQCQILSRLQSQQQIKVLII
IRMDSDGEKHLLIKTLKKIEGLTLTVLRSNERKDFLETTSVLKGTSSCVVVHNHNIGADF
PWSSFSLVVEYNHVGHSCWARHCQQLSVPFLALKAVLPDTASLKRNTLLDRFGGFPLEIQ
IPYIFFASEGLLNAPEILRLLESDYDITLVERCCCESLKLFGSTEHYGVVTVDEQTAVVV
QDLEELYYEKASDNIIMRLMALSFQYNCCWIILYPKETLSSEYHLTEKTLHHLAQIYAAL
VSSGLKSEELDVKLIISPGVEETALIIRQIADHNLMTSKRDPHEWLDKSWVEVSPSQEEM
NLLDFPCINPLVAQLMLHRAPSLHWLLTASPAELQKLLPQVPAKVLKHFCSITSLFKISC
SSVSKSPQISSLQEDMTQSSPFISQSLAPVIQEHDEYYSYEDSEEAAQEGTSSSLLELRE
TPYMLPSAASYSQASSWTDSVCGPNTVQNSPFLINKESKKVTRHSFPSQDDSESGVFSLG
LTQINCGPDMLPSDTQRRVIHNFVNYPKAKGSRNMQVSTPVFLPEASHPHHCWDLKKNSG
RKQIHSFSSSCGTEQTAYNKWYPQKDELPSDQPEYLSAELEALTYRHSTAGRERPSVPSW
DSFYAPDFNVNPRGLNSLNFYQTAGNYLGQRRLHVSSSSWGDYETPTGLMYSQVPQPKRQ
RLTYEKVPGRMDGQTRLRFL
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccagaattcccgggaaaacagacttctgaggcgtggtttgcgtggcccagca
gggatgagatcgcgaattcagctgctgtcccacctcgttaggggcagcagggaatatgag
gggcctggccggccaatattgaactgtgtgactttgaagggaagagctatgttttcagca
ttcaagtactatgcaatagactatttacatgagaacacagttaaagaaaagctttacaaa
gatgctttattgcttcagatcccttcatgtttaaatcaagataaaaattttattgatgat
aaatataggagtccatggacaagagctatttcagctccagagatgacagataattcactc
ttggaacagtggacaacaaggttctgtgtggaggatattcctgagaaaaagacagttaca
ggaatgatgattaatggtacatttgaggaaattgttccaagttccaatccaaactctcca
actggaatagagaatgtcagctcgtaccccagtaaggaccacagagaagacttcacacct
atcaagtgctccccatactaccccggagtgaaagcagagcaccaaggattacttattgat
gaggaaatgatttttataaataaagctgtagacaatcatctaccaactgtggatactctg
ttgagtagactaaagctctatctggttaaggatccacttttagatttcaaagaacagctc
tccggaaaggataatttcacggagtgtttctctgttcaagaacgtttggaaccttttgta
agagatttccatatggtggaggagaccttttgtaagaagaagctaccatctgtttttccg
tctgagtatgaattcttaatatctacaaaccccaaacaagaaattcctattctaccatca
tcaaaactgaaggaatcaatgtctgagataatggattatgtagatgaaaatgaaaaactt
tttaaaagagatctttctaccaagcatgaatttgatactgatgatatgaaatgcaactcc
acagagatcttacctattgcaagcccacgtgaaccagagtgcaacaaaccaggagaatta
gaaatatcaccaaccaatctaagcttaccaaggcaatattcttcagtgagttcattatgt
gcaggatttcatacatttccattttctgctgtgtgtaaaattaatttgcttagtgctgga
gaatcgactaatagatattgcatgctgtggcagttgggaagctgcagaaactcttgggtc
tcattcttgcttacagttccaagactccaagagcccagcggtcaatattctcttgcagat
atgaggagtatcttttctattaaaggagacagccttgtgattaaccctgcaaaagcaaag
aggtggagacaagcaagactaaatccaataatggctgaaactttggagcatttgaaggca
tatttgtgtcacaatggtctgtcttctaaggaaactaagctggagatctttctgcctaca
aaagtgcttcagctggaatcctggctagaacatcagagtcgacccttgcccatcatgcct
aagagtgataaatctaccaatgttcagagattacgtccacagaagagaccatcttcagaa
aaacaagtgccacatctgcttttgtctgatgaatgtgtctctgttaaaaaaccaaaaact
gaagaaaatccaaagaataaccaagaagtagcttctaaaataatgcagaacacagacagt
agtcgtgttggacttgataactctgtgccgtttgttgaaccaacttcctcttcatggatc
aaggcatcttatgataaaaaacaaaatgatttggaccttttgagtgaatttattactctg
agaagtaaagacaagccttctacttcagatgatgaagtcacaggccatgaccaaaacaat
gaatttcaggataaagaaaagtgttcttcgactcttcaagaagaaagtcctattgtttct
aacaacaaaactccagaggaaagatttcaagaaaggacagatgatgtcattgagattcaa
gcatcagacacccagtgccaagcatactatctcctagaagcagcagcgactcctgtctta
aagaagcttgcttgcctctgtacttaccctgctgctgattggaaatttgccactgtcatt
tttgaccaaacaagattcttcttaaaggaacaagaaaaaataataaatgatgctgttcac
caaggtaaaactgatgacagagaaataacgttcaggcatgctgctttcttacatctcctg
gtaacaatcagagatgcccttttaacatgcagtttggacacagcattaggatatttgtca
aatgcaaaagatatctacaaaagcatgttagactcctgcttggataacatttggagacag
ctgaaaattttacagtttattnaacgaaaaaggcctaaacccaattataagattgaagaa
ttacaatgtcagatactaagcaggttgcaaagtcaacaacaaattaaggtactgattata
ataagaatggactcagatggagaaaagcatttacttattaaaactcttaagaaaatagaa
ggtttaacattgactgttttacgttcaaatgagagaaaagatttcctggaaactaccagt
gttttaaaaggtacaagttcctgtgtggttgtgcacaatcacaatattggagcagatttc
ccctggagcagcttctcactcgtggtggagtacaatcacgtgggacactcttgctgggcc
aggcactgccagcagctgagcgtacctttcctggccctgaaagccgttcttccagacaca
gcttctctgaaaagaaacaccttgctggatagatttggtgggtttcccttggaaattcag
atcccatacatattttttgcttctgaaggattacttaatgccccagaaatactccggctg
ctggaatctgactatgatatcacactagtggagagatgctgctgtgagtcactgaaactc
tttggaagcacagagcattatggagtggtcacagttgatgagcagactgctgtagttgta
caggacctagaagaattatattatgagaaggcatcagacaatatcattatgagattaatg
gcattgtcattccagtataactgttgttggataatactatatcccaaggaaacattaagt
tcagagtaccatctcacagaaaagacacttcatcatctcgcacagatttatgcagctttg
gtttcctcgggtcttaaatctgaagaactggatgtaaagcttataatttccccaggtgta
gaagagactgctttaataattcgacaaattgcagaccacaatttaatgacgtcgaagaga
gatcctcatgagtggttggataaatcctgggttgaagtttcaccatctcaggaagaaatg
aacctacttgatttcccatgtattaacccactggtggcccagctcatgttacacagagct
ccttccctgcactggctgctgacagcatcgcccgctgagcttcagaaactcctaccccag
gttccagccaaagtactgaagcatttttgtagcatcacctccttgttcaagattagttgt
tcctctgtgtcaaagtctcctcaaatctcatcacttcaggaagatatgactcaaagtagt
ccctttatttctcagagtttggctcctgtcattcaagaacatgatgaatattattcctat
gaagactctgaagaagcagctcaggaaggcacgagctcttctcttctagagctaagagaa
acaccatacatgttgccatctgcagcatcttacagtcaggccagctcctggacagactct
gtttgtggccctaacacagtgcagaatagcccttttctaattaataaggagtcaaagaaa
gtgactcggcactcctttccaagccaggatgattcagaatcaggtgtcttctctctgggt
ctaacacaaataaattgtggacctgacatgttgccaagtgatactcagaggagagttatt
cataattttgtaaattatccgaaagcaaaaggaagcagaaacatgcaggtgtccacccct
gtctttttaccagaggcttctcacccccaccattgttgggacttgaagaaaaacagtggt
aggaaacagattcattcattcagttcaagctgtggaacagaacaaactgcatacaacaaa
tggtacccacaaaaagatgagttacccagtgatcagcctgagtatctgtcagctgaattg
gaagccctcacatacagacattcaactgctgggagagagcggccgtctgttcccagctgg
gattcattctatgctcctgattttaatgtaaacccaagaggattgaatagccttaatttc
taccaaacagctgggaactacttaggacagagaaggctccatgtatcttcatccagttgg
ggagactacgaaacaccaacaggtttaatgtactcacaagtaccacaacccaaaagacaa
cgtctaacgtatgaaaaagtccctggaagaatggatggacaaacccggctgaggttctta
tga
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integrated database retrieval system
