Phodopus roborovskii (desert hamster): 127224774
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Entry
127224774 CDS
T08852
Symbol
Col27a1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04820
Cytoskeleton in muscle cells
prob04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127224774 (Col27a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
127224774 (Col27a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
prob00536
]
127224774 (Col27a1)
Glycosaminoglycan binding proteins [BR:
prob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127224774 (Col27a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
127224774
NCBI-ProteinID:
XP_051043908
LinkDB
All DBs
Position
Unknown
AA seq
1846 aa
AA seq
DB search
MGTGSAQGARGTAAAGHGGGFLFAWILVSFSCHLASTQGAPEDVDVLQRLGLSWTKAGGG
RSPAPPGVIPFPSGFIFTQRARLQAPTATILPTTLGQELALVLSLCSHRVNHAFLFAIRS
RKHRLQLGLQFLPGRTLVHLGPRQSVAFDLDVHDGRWHHLALELRGRTVTLVTACGQHRI
LIPLPSRRDSMLDPQGSFLLGKMNPRAVQFEGALCQFSIHPVAQVAHNYCTHLRERCRQV
GTYGPQVGVLFPWDSGPAFALHPEPAFLGLGNLTRAPATLGARPVVRGPMVTMAPAMPTK
PLRVVPQHSSARTPLAPAKQSARKTTSPLPSASLATSTRISHPAAALPLQITVTSPSKHT
PTESSPRSLLVTPVKSPHPTQKTASPSFTKPVVLPAQKPVTHTSHLAPSKASRPTVGPVQ
KTFVTPRPLAPSPQPLRPTAGLLKKSATIPTLAESKSKMTSWASKPVRISAPKSPQQTVV
SQSPVPYLGSTRASLTLATALPPLGSGNPRMAPPTRDSSSTPAGSKKFTGLEASKKTRSK
NSPRKPIPLSPEKTARDGPPRDLTTKPNQLSTPALVLAPAHLLSSSPQPTSSSFPFFHLP
GPTPFPMLMGPPGSKGDCGLPGPPGLPGLPGSPGARGPRGPPGPYGNPGPPGPPGAKGQK
GDPGLSPGQAHDGAKGNMGLPGLSGNPGPLGRKGHKGHPGAAGHPGEQGQPGPEGSPGAK
GYPGRQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGEMGRPGFPGDF
GERGPPGLDGNPGEIGLPGPPGVPGLIGDMGALGPIGYPGPKGMKGLMGGVGEPGLKGDK
GEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKAGDKGSLGFPGPPGPEGFPGDI
GPPGDNGPEGMKGKPGARGLPGPSGQLGPEGDEGPMGPPGVPGVEGQPGRKGFPGRPGLD
GSKGEPGEPGRPGPVGEQGLMGFIGLVGEPGIVGEKGDRGVMGPPGAPGPKGSMGHPGMP
GGIGNPGEPGSRGPPGSRGPPGMRGAKGRRGPGGPDGPAGEQGSKGLKGRVGPRGRPGQP
GQQGAAGERGHSGARGFLGIPGPSGPPGAKGLPGEPGSQGPQGPAGPPGEMGPKGPPGAV
GEPGLPGDSGTKGDLGPLGPPGEQGLIGQRGEPGLEGDVGPMGPDGLKGDKGDPGPDGER
GEKGQEGLKGEDGLPGPPGITGIRGPEGKPGKQGEKGKMGAKGAKGYQGQLGEMGIPGEP
GPPGTPGPKGSRGTLGPMGAPGRMGAQGEPGLAGYNGHKGITGPLGPPGPKGEKGEQGED
GKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGQPGP
KGSKGEEGPKGKPGKAGTSGRRGTQGLQGLPGPRGVVGRQGPEGMAGADGTPGRDGRPGY
QGQQGDDGAPGPMGPAGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGPHGKRGMEGGTGL
PGNQGEPGSKGQPGDSGEMGFPGVAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGP
PGMLGPSGLPGPKGDRGSRGDWGLQGPKGPPGPRGRPGPPGPPWHPVQFQQDDLGAAFQT
WMDAHRAVRPEQGYSYPDQLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLM
DCEQRMADGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAVSRVQMNFLHL
LSSEGTQHITIHCLNLTVWHEGPGRPSARQAVRFRAWNGQVFEAGGQFRPEVSVDGCKVH
DGRWHQTLFTFRTQDPQQLPIVSVDNLPPASSGKQYRLEVGPACFL
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgggatcggcgcagggggcccgaggcacagctgcggcaggacacggggggggc
tttctcttcgcctggatcttggtctcattttcctgtcatctggcctccacccaaggagct
cctgaagatgtggatgtcctccagcgactgggcctcagctggacgaaggccgggggtggc
cggagccctgcaccccctggtgttattcctttcccatctggcttcatcttcacacagcgg
gccaggttgcaggcccccacggccacaatccttcccaccaccctgggccaggagctggcg
ctggtgttaagcctctgctcgcaccgtgtgaaccatgcctttctcttcgccatccgcagc
agaaagcacaggctgcagctgggcctgcagttcctccccggcaggacacttgtccacctg
gggcctcggcaatctgtggccttcgacctggatgtacatgatgggcgctggcaccacctg
gctctagagcttcgtggccgcacggtcacactggtgacagcttgtgggcagcacaggata
cttatcccgctgccttcccgtagggactccatgcttgaccctcagggctcctttctcttg
gggaagatgaaccctcgtgctgtccagttcgaaggtgcactctgtcagttcagcatccat
cccgtggcgcaggtcgctcataattactgtacccacctgagagagcggtgccgacaggtg
ggcacatatggtccccaggtgggagtcctcttcccctgggactctggcccagcctttgct
ctgcatcctgaaccagccttccttggcctggggaacctgaccagagccccagcaaccctg
ggggctaggcctgtagtcaggggacccatggtgactatggctcctgccatgcccaccaag
cccctgagggttgtcccccaacacagctctgcccggaccccactggcacctgccaagcag
tcagccagaaaaacaacttcccccttgccttcagcttctttggctacttccaccaggatt
tctcatccagctgctgccctgccactacagatcacagtcactagccccagcaaacatacc
ccaactgaatcttccccacgttcccttttagttacccctgtgaaaagtcctcatccaacc
cagaaaacagcttccccttcatttacaaagcctgttgttctacctgcccagaagccggtg
acccatacctcccaccttgcaccttccaaagcctctcgtcccacagtcggacctgtccag
aagaccttcgtgacaccccgaccgctagcacccagtccccagcccctgcgtcccactgct
ggcttattgaagaagtccgctactattcccaccctagcagagtctaaatccaagatgacc
agttgggccagcaagcccgtccgcatcagtgcccctaaaagtcctcagcaaactgttgtg
tcccagtcccctgttccgtacctgggctctacgagagcctctctgacgctggctacagcc
ctccctccactgggcagtggaaatcctagaatggctcctcccactcgtgactcttcttca
actcctgctgggagcaagaaattcacaggactggaagcctccaagaaaaccagatctaag
aacagcccccggaagcccatacctctcagccccgagaagacagcgagggatggcccacca
agagacctgacaaccaagcccaaccagctgtccaccccagcactggtccttgccccagct
cacctcctgtcctccagcccccagcccaccagcagcagcttccctttcttccacctgcca
ggccccacacctttcccgatgctgatggggcctccaggctccaagggagactgtggcttg
ccgggtccccctgggctgccgggattacctggatctccgggtgcacgaggtcctcggggt
cctcctgggccatatggtaacccaggcccacctggccctccgggagccaaaggacagaag
ggggacccaggactctcaccaggacaggctcatgatggggcaaagggcaacatgggcttg
cctgggctctccggaaatccaggacccttgggacggaagggacacaagggccatcctgga
gcagcagggcaccctggagaacagggccagccaggacctgagggcagtccaggggccaaa
ggttaccctggcaggcaggggttccctggacctgtaggagatcctggccccaaaggcagc
cggggttacattggactcccggggctcttcggcctgccggggtcagatggagagcggggc
ctccccggtgttcctggcaagaggggcgagatgggtaggccgggcttccctggagacttt
ggggaaagaggccctccgggactggatgggaaccctggagaaattggcctgccagggcca
ccaggagtccccggcctcattggtgacatgggagcattaggtcccattggctacccagga
cccaaaggcatgaagggactgatgggcggcgtgggggagcccggactgaaaggtgataag
ggtgaacaaggggtcccaggtgtgtcgggagatcccggcttccaaggagacaagggcagt
cagggcttgccagggttcccaggtgcccgagggaagccagggcctctgggcaaagctgga
gacaaaggctcacttgggtttcctggacctcctggtcctgagggtttcccaggagacatt
ggccccccaggggacaacggtcctgaaggcatgaagggtaagcctggagcccgaggcctg
cctggaccttccgggcagctgggacctgagggagatgaaggacccatggggccaccagga
gtcccaggcgtggagggtcagcctggaaggaaggggtttcctgggaggcctggcctggat
ggctcaaagggagaaccaggagaacctggacggccagggcctgtgggtgaacagggactc
atgggattcattggtctggtaggggagcctggaatcgtgggggagaagggagaccgtgga
gtgatgggacccccaggcgcacctggacccaaggggtcgatgggccatcctggaatgcca
ggtggtatcggaaaccctggagagcctggatcccggggccctccaggatctcgaggccca
ccaggcatgaggggagccaaggggcgccggggccctggaggacctgatggaccagctggg
gagcaggggtccaagggcctgaagggccgtgtgggacctcggggcagacctggccagcca
ggacagcagggtgcagctggtgagcgaggccactcaggtgcaagaggcttcctcggcatc
cctggaccctcgggccctccaggtgccaagggcctcccaggagaaccgggctctcaggga
cctcaggggccagctggtcctccaggagagatgggacccaaggggccaccgggtgcagtg
ggagagcctggccttcctggggattccgggacgaagggtgaccttggacctctgggcccc
cctggggagcagggcctcattgggcagcggggagagccaggccttgagggagacgttggc
cccatggggcccgacgggctgaagggggacaaaggtgacccagggcctgatggtgagcgc
ggtgagaagggccaggaggggctgaaaggagaagatgggctccctgggcccccaggcatt
actggcatccggggtccggaaggaaagcccggcaagcagggtgagaagggcaagatggga
gctaagggtgccaagggctaccaaggacagctgggggagatgggcatccccggagagcct
gggcccccaggcaccccaggtcccaaagggtcccggggcaccctaggaccaatgggtgct
ccaggacgcatgggagcccaaggagagccagggttggctggttataatggacacaaaggc
atcacaggacctctcgggcctcctgggcccaaaggcgagaagggggagcagggcgaggat
ggcaaggctgaggggccccctgggccccctggagatcggggtcctgtaggcgatcgagga
gaccgtggggagccaggagaccctggataccctggtcaagagggagttcaaggcctccgt
ggaaagccgggccagcagggccagcctgggcatccaggaccccgggggcagccaggacct
aaaggatcaaaaggcgaagagggtccaaagggaaagcctggcaaggctgggacgtcaggc
cggaggggaactcagggactgcaggggctgccagggccccggggtgtcgtagggagacag
ggccctgagggcatggctggagctgatgggactcctggcagggatggccggccaggatat
cagggacagcagggagatgatggggcccctggccccatgggccctgctgggagaagagga
aacccaggtgtggctggtttgcctggagcacaggggcctccaggattcaagggtgaaagt
gggttacctgggcaactgggtccccatggaaagcgagggatggaaggtggaacaggactt
cctgggaaccagggggagccaggatccaaaggccagccgggtgactctggcgagatgggc
ttcccaggagtagctggcctctttggacccaagggcccccctggagacattggcttcaaa
ggcatccaaggccctcgcgggcctcctggcttgatgggaaaggaaggtatcattgggccc
ccaggaatgctaggaccttctggactcccgggtcccaagggtgacagaggcagccgaggg
gactggggactgcaaggcccaaagggtcctcctggtccgagggggcggcctggtccaccg
ggtcctccttggcatcctgtccagtttcagcaagatgaccttggggcagctttccagaca
tggatggatgctcacagagcagtcagaccagagcaggggtacagctatccggaccagctg
gtgctggaccagggaggagagatcttcaaaaccttacactacctcagcaacctcatccag
agtattaagacgcccttgggcaccaaggagaatccggcccgggtctgccgggacctcatg
gactgtgagcagaggatggcggatggtacctactgggtggaccccaacctcggctgctcc
tctgacaccattgaagtctcctgtaactttacacatggtgggcagacgtgtctgaagccc
atcacagcctccaaggtggagtttgctgtgagccgggtccagatgaatttcttgcacctg
ctcagctctgagggaacacagcacatcacaatccattgcctgaacttgacagtgtggcat
gagggcccagggcgcccatctgccaggcaagccgtgcgcttccgtgcctggaatggacag
gtcttcgaagctgggggtcagttcaggccagaggtgtctgtggatggctgcaaggtccac
gatggtcgctggcaccagacactgttcaccttccgaacccaggacccacaacagctgccc
attgtcagtgtggacaacctcccacctgcctcatcagggaagcagtatcgcctggaagtc
ggacctgcgtgcttcctctga
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integrated database retrieval system
