Phodopus roborovskii (desert hamster): 127224904
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Entry
127224904 CDS
T08852
Symbol
Frem1
Name
(RefSeq) FRAS1-related extracellular matrix protein 1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127224904 (Frem1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
prob04091
]
127224904 (Frem1)
Lectins [BR:
prob04091
]
C-Type lectins
Lecticans
127224904 (Frem1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
127224904
NCBI-ProteinID:
XP_051044073
LinkDB
All DBs
Position
Unknown
AA seq
2183 aa
AA seq
DB search
MPVDRTGPGIMNSPGCTGPKALLFLLLQLILLHLDPANSTFISINWGLRVMKGSSAFLSE
DHLKFAIPKEKDACRVEVVMNEPITQRVGKLTPQVFDCHFLPNEVQYVHNGCPILDEDSV
KLRLYRFTDTDTFMETFLLQVHLVEPDCNIIRLSSNMLEVTEFYGLSQAIDKNLLQFDYD
RTAHLDCTIRLDPVGTQLPAHGKLVVLHHKPEGPRGDQPHSFFSETQLGAGLKCPGGNCA
LGLQTVGSLKTSCEEFLLMGLHYQHTHPPSPNIDYIAIQLDLTDRRSQATYKSESVWLPV
HIRVGIPNQAPRAAFMAMFVLEVDQFILTPLTTSVLDCEEDETPKPLLMFNITKAPLQGY
MTHLLDHTRPISSFTWKDLSDMQVAYQPPNSSYPERRNYKVELEVYDFFFERSAPMTVHI
SIRTADTNAPRVSWNTGLNLLEGQSRAITWEQFQIVDNDDIGAVQLVTIGGLQHGRLTVR
EGKGFLFTVADLQAGVVRYHHDDSDSTKDFVAFRIFDGQHSSHHKFPINILPKDDSPPFL
ITNVVIELEEGQTILIQGSMLRASDMDSSDDYIFFNVTKFPQAGEIMKKPGPGLIGYPVP
GFLQRDLFNGVIYYRHFGGEIFEDSFEFVLWDSHEPPNFSVPQMVMIHITPVDDQLPKEA
PGISRHLVVKETEVAYITKKHLHFLDTESHDGELIYTITRPPCFSFSHRHLDAGKLFLVD
SIPKLIKNPAVRGLRSFTQHAVNHMKVAYMPPMQDIGPAPRHVQFTVSVRNQHGGTLHGI
CFNITILPVDNQVPEVFTNTLRVAEGGQCTISTENILVSDVDTPLESICLSLQELPFHGR
VELDGFPLNPRGTFSWTDLHTLKVRYHHDGSEVVQDEIFLEVTDGTNSAEFVLHIEVIPM
NDEPPVLKANLIPMMHCSEGGEVTITPEHIFATDADSDDLKLLFLIAREAQYGVMRKAGI
VVDRFSQEDVISGAVTYKHTGGEIGLVPCFDTIILVVSDGEAGPLVNGCCYNGPNPSVPL
HESFPMYQLNITVHPVDNQPPSIIIGRMFVVDEGFSSALTTYHLTASDPDTAPEDLEFVL
VSHPQFGYLENTLPSTGFEKSNMGISIASFQWRDMKTLHINYVQSMHLSVEPTADQFMVY
ATDGEQRSLETAFHIIINPTNDEAPDFVVQNISVCEGQTTQLDSSIIAAADRDVPKDPLL
FSIIQKPQHGLLINGAISKESPQIKMQNCEIHNFSMDLLKTGLKLAYVHDDSESLTDNFV
IQLSDGKHKILKTISVNITPVNDEKPTLSKKAEISMTMGDTRVLSSAVLSAIDKDSPRET
IHYLFERLPQNGQLQLKIGRDWVPLSAGMQCTQEDVDLNLLRYTHTAKMGSQDGDSFTFY
LWDGDNRSPAFDCHIIIEDSGKGDIVIHVRPLVVAKGDRGFLTTATLLAVDGADKPEELL
YLITSPPQYGQVEYAHYPGVPITSFSQMDIAAQTVCYTHKSRATVPGDSFRFTISNGLQT
QHGVFEITLETVDRALPVVSRNKGLRLAEGAVGLLSADHLQLTDSDTPPANLTFLLAQLP
RHGYLSLRGKVLRHNFTQQDVDSRGVSYQHSGGRSQADCFTFRATDGKNQGFVVDGKIWK
EPVFFTIQVDQLDKEAPRITRLHSPSQVGLLKNGCYGIYITSHVLKASDPDTEDDQIIFK
ILHGPLHGRLENTTTGELIREQFSQKDLRSKTILYIINTSLQVDTDILEFQIMDPTGNTA
TPQSLELKWSYIEWFQTEYEVCEDVGLLPLEVTRRGYSVESAFVGIEVNQVSAVVGKDFI
VTPSKLIQFDPGMSTKMWNIAITYDGLEEDDEVFEVILNSPVNAVLGTKTKAAVKILDSK
GGRCHPSNSFNQSKHSTWGKGTWHPPPPGSSSLNTAGSPHLERGPPPSSTKGDALQDFDP
TDLSQRMMRTHGNGKSVPPSSVCRNGTDTIYNYHGIVSLKLDSGSFSAHKGKAKISIISQ
PQKTIKVAERPPADVVESTTDSHFPRQGQLPLFPKNCSVELKGLFHFEESIHRLYLCDGI
TWKAWSPQTKGLEGKSCPAGWHLHSGYCHTLVTQRKGTWTMATRACREQHQGNLVTVFSR
RHMQWLWDIGGRKPFWIGLKNQEGTGLWEWIGGEPVAFTNWRRGPPQHPRPGKSCVLVHK
RGQWQSKNCSKGKAHNFVCSRKL
NT seq
6552 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtggacagaactggccctggcatcatgaactctccaggctgtactgggcccaag
gccctgctgttcttgctgctccaactcattttgctgcacctggacccagccaactccacc
ttcatcagcatcaactgggggctgagggtgatgaagggcagttctgccttcctgtctgaa
gatcatttgaagtttgccatccccaaagagaaggatgcctgtagagtggaggtggtgatg
aatgagccgataacccagagggttgggaaactcactccacaggtctttgattgccatttc
cttcccaacgaagtacagtatgttcacaatggatgcccgattcttgatgaagattccgtg
aagcttaggctttatagatttacggacacagacaccttcatggaaacctttctcttgcaa
gttcatctcgtggaaccagactgtaatatcatccgtctaagcagcaatatgctggaagtg
actgaattctacggcttgtcccaagccattgacaagaacctgctccaatttgattatgac
aggacagcccacctggactgtaccatcagactggatccagtggggactcagctgccagcc
cacggcaagctggttgtgctgcaccataagccagagggacctcgtggagatcagccacac
agctttttttctgagacccagctgggagcaggactgaagtgtccaggtggcaactgtgcc
ctggggttgcaaactgtgggaagtctgaagacgagctgtgaggagttcctgctgatggga
cttcactaccaacacacacaccccccttcacccaacattgattatatagccatccagctg
gacctcacggacagaaggagtcaagccacgtacaagtcagagagtgtgtggttgcctgtg
catatcagagttggcattcctaaccaggccccaagggctgcattcatggccatgtttgta
ctggaggtggatcaattcatactgacacccctgacaacctccgttctggactgtgaggaa
gatgagacccccaaacccttgttgatgttcaatatcactaaagccccgctccaaggctat
atgacccacctgctagatcataccagacccatctcttcgtttacctggaaggatctaagt
gacatgcaagttgcctaccagccaccaaacagcagctatcctgagcggagaaattacaag
gtggagctggaggtgtatgacttcttctttgagaggagcgcccccatgacagtccacatc
tccatcagaacagcagacacgaatgcacccagagtgtcctggaatacaggtctgaatctc
ctggagggacagtctcgggccatcacttgggaacaatttcagattgtcgacaatgatgac
attggtgctgtgcagttggtcaccattggtggcctgcagcatggacggcttacagtaaga
gagggaaaaggatttctcttcactgtggctgatctacaggctggagttgttcgctatcat
catgatgacagtgactctaccaaagactttgtggctttcaggatatttgatggccaacac
agcagccatcacaagtttccgatcaacatcttgcccaaagatgatagccccccatttctc
ataactaatgttgttattgaactagaagaggggcagaccatcttgatccaagggtccatg
ctgagagcttcagatatggactccagtgatgactacatcttctttaatgtcacaaagttc
ccacaggctggggagatcatgaagaagccagggccaggactgatagggtatcctgtccct
ggcttccttcagagagacctgttcaatggagtcatttactatcgtcacttcggtggagaa
atctttgaagattcttttgaatttgtcctatgggacagccatgaacctccaaatttttcc
gtgccacagatggtgatgatccacatcactccagtagatgaccagcttccaaaagaggct
cctggtatttcccggcatttggttgtcaaggaaacagaggtggcctacatcactaaaaag
catctacatttcctggatacagaatcacatgatggggagctcatctacacaataacacgc
cctccatgtttctccttcagccacagacacttggatgccgggaaattattcttggtagac
agcataccaaagctaatcaaaaatcctgcagtccgggggctgagatcatttacccagcat
gctgtgaaccacatgaaagtggcctacatgccacccatgcaagacataggtcccgctcct
cgacatgtgcagttcacggtgtctgtcaggaaccagcatggaggcaccttacacggaatc
tgcttcaacataacaattctgccagtggacaatcaggtcccggaggtgtttaccaacacc
ctgagagtggccgagggtggtcagtgcaccattagcaccgagaacattttggtttctgat
gtggacaccccactggagagcatctgcctctcccttcaggaactgcctttccacggcagg
gtggagctggatggattcccgctaaacccaagaggcacattttcatggacagacctccat
accttaaaagttaggtatcaccatgatggatctgaagttgttcaggatgagatattcttg
gaggtcacagatggcacaaattcagcagaatttgttctacacattgaggtaatccctatg
aatgatgagccacctgttctaaaggctaacctcattcccatgatgcactgctcagagggt
ggggaggtgaccatcacacctgaacacatttttgctactgatgcagacagtgatgacttg
aaactgctgtttctgattgcccgagaagctcagtatggggtgatgagaaaggctggaata
gttgtggacaggttctctcaggaggatgtcatctcaggggctgtgacatacaaacacaca
ggtggggaaattggcttggtgccttgttttgacaccattatattggtggtttcggatggt
gaagctggccctttggtgaatggctgttgctacaatggacccaacccatctgttcctctt
catgagtcctttcccatgtaccagctcaacatcacagtgcatccagttgacaaccagcca
ccttcaattataataggtaggatgttcgtggtggatgagggattctcatcagcccttact
acctatcatttgaccgccagtgacccagacactgccccagaagacttagaatttgttttg
gtttctcatccccaatttggctaccttgaaaacacactcccttctacaggttttgagaaa
agtaacatgggtataagcatagcttcattccagtggagagacatgaagactttgcatatt
aactacgtgcagtccatgcacctgagtgtggaaccaactgctgaccagttcatggtttat
gccacagatggggagcaacgctccttagagacagcatttcacattatcatcaaccccaca
aatgatgaagctcctgactttgtggtacagaatatcagtgtgtgtgagggtcagacaaca
cagctggattcttccatcattgctgctgctgacagggatgtcccgaaggaccccttgctc
ttcagtatcattcagaagccccagcatggcctcctcatcaatggggccatcagcaaagaa
tctcctcagatcaagatgcagaactgtgaaattcacaacttctccatggaccttctcaag
actggactgaagctggcctatgtccatgacgactcggagagcctcactgacaactttgtg
atccagctgtccgatgggaaacataaaatacttaaaaccatttcagtaaatatcacccca
gtgaatgatgagaaaccaacgctaagcaagaaggccgaaatatcaatgaccatgggagat
acacgtgttctgtctagcgccgttctttcagccatagataaagactcgcccagagagaca
attcactatttatttgaaagacttccccaaaatgggcaacttcagcttaagataggaagg
gactgggtccctctctcagctggtatgcagtgcacccaggaggatgtggacctgaacttg
ctgagatacacacacactgccaagatgggttcccaggatggagacagtttcaccttctac
ctctgggatggggataacagatcacctgcgtttgactgtcacatcatcattgaagactca
gggaaaggtgatattgtcattcatgtaagaccactcgtggtagccaaaggtgacagaggt
ttcttaacgactgccactctcctggctgtggatggagcagacaagcctgaggaactactc
tacctcatcacttctccaccacagtatggccaggtggagtacgcccactatcccggagtc
cctatcaccagctttagccaaatggacatagcagcgcagacagtctgctatacacacaag
agcagggcaactgtccccggtgacagcttcagatttaccatcagcaatggactgcagacc
cagcatggggtgtttgagatcacactggagactgtggacagagccttgcctgtggtgtct
aggaacaaagggctgaggctggctgaaggggccgtgggtctactctctgctgatcacctt
cagctgactgactctgacacacctccagcgaacctaaccttccttctggcccagctccca
cgccatgggtacctctccctgagggggaaagtgcttcggcataattttactcagcaagat
gtggacagcaggggtgtgtcctatcagcactcaggaggccgctcccaggcagactgcttt
actttccgggccaccgatgggaagaaccaaggctttgtggtggatgggaaaatctggaaa
gagcctgttttcttcaccatccaggtggaccagctggacaaagaggcaccccggatcaca
cgcctgcactccccttctcaagtggggctcttgaaaaatggctgttacgggatttacatc
acttcccatgtgctgaaggcgtcagacccagacacggaggatgaccagatcatctttaag
attttacacggcccattgcatggacgtctagagaacacaaccacaggtgaattaatccgt
gagcaatttagccagaaggacttaaggagtaagaccattctttacatcataaacacatct
ttgcaagtggatacagatatcctggagtttcagatcatggaccccacagggaacactgcc
actcctcaaagcttggagctgaagtggtcttatattgaatggttccagactgaatatgag
gtttgtgaggatgtgggcttattgcccttggaagttaccagaaggggatattccgtggag
tcagcctttgtgggcatagaggtcaaccaagtgtcagctgtagttggaaaagattttatt
gtcacgccatccaaactgatccagtttgacccaggaatgtcaactaagatgtggaatata
gcaattacctatgacggattagaggaagatgatgaggtctttgaagtaattctgaactcc
cctgtgaatgcggttcttggcacaaagacaaaagctgcagtgaaaattttggactcaaaa
ggaggacggtgccatccttcaaattccttcaaccaaagcaagcacagcacatgggggaag
ggcacttggcatccaccgcccccagggtcatcctcactcaacactgctggttctcctcat
ctggaaaggggacctcctccatcttccaccaaaggagatgcccttcaggactttgatccc
acagacctctctcaaaggatgatgaggacccatgggaatggaaaatcagttcctccatcc
tctgtctgtagaaatggaacagacaccatctacaattatcacggcatagtttccttgaaa
ctagacagtggtagtttctcagctcacaaagggaaggccaagatatccattatcagtcaa
ccacagaagacaatcaaggtggcagagaggcctccagctgatgtggtggaatccacaact
gactcacacttccccagacagggtcagctgcccctgtttccaaagaactgttctgtggaa
ttaaagggactgtttcattttgaagaaagcatccacagattgtatctatgtgatgggatc
acctggaaagcctggagtccccaaaccaaggggctggagggcaaatcctgcccagctgga
tggcatcttcactcaggctactgtcacaccttggtcacacagaggaaaggcacgtggacc
atggctacccgagcttgcagagaacagcatcaaggcaacctagtgacagtcttctccagg
aggcatatgcagtggttatgggatatcggtgggagaaagcccttctggattggcttgaag
aaccaagaaggcactggcctctgggagtggattggaggtgaacctgttgcatttactaac
tggaggagagggccccctcagcatccaaggcctggaaagagctgtgttttggttcacaaa
agaggacaatggcaatcaaagaactgtagtaaaggcaaggctcacaattttgtgtgctca
aggaaactctga
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integrated database retrieval system
