Phodopus roborovskii (desert hamster): 127225312
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Entry
127225312 CDS
T08852
Symbol
Pabpc4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03015
mRNA surveillance pathway
prob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127225312 (Pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
127225312 (Pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127225312 (Pabpc4)
03041 Spliceosome [BR:
prob03041
]
127225312 (Pabpc4)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127225312 (Pabpc4)
mRNA cycle factors
Stress granule specific factors
127225312 (Pabpc4)
Spliceosome [BR:
prob03041
]
Complex C
Other components
Complex C specific factors
127225312 (Pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_10
RBD_RDR6
POP1_C
Motif
Other DBs
NCBI-GeneID:
127225312
NCBI-ProteinID:
XP_051044676
UniProt:
A0AAU9ZE03
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDENLKELFGQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEMNGKAIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILSQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
AQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPAAVPSLAPRAAVAAAAPRAVAPYK
YASSVRGPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHS
NLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGVGTVAAA
ATS
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggccagcagctaccccatggcctccttgtacgtgggcgacctgcactca
gacgtcaccgaagccatgctatatgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctctctgggttatgcctacgtcaacttccag
cagccagctgacgctgagagagctttggataccatgaactttgatgtgattaagggaaag
ccaatccggatcatgtggtctcagagggatccctctttgagaaagtctggtgtagggaac
gtcttcatcaagaacctggacaaatctatagacaacaaggcactttatgacactttctcg
gcctttggaaacatcctgtcctgtaaggtggtttgtgatgagaatggctctaagggttat
gcctttgtccacttcgagacccaagaggctgctgacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgcaaagagcgggaa
gctgagctcggggccaaggccaaggaattcaccaatgtttatatcaaaaactttggggag
gaagtggatgatgagaatctgaaagagctgttcggccagtttggtaaaactctaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtaagttacgaaaaa
cacgaggatgccaataaggctgtggaagaaatgaatggaaaagaaatgaatgggaaagca
atattcgtaggccgtgcacagaaaaaggtagagcgccaggctgaattaaaacggaagttt
gagcaactgaagcaggaacgaattagtcggtaccagggagtgaatctctacattaagaac
ttagatgataccattgacgatgagaaattaaggaaagagttttctccttttggatcgatc
accagcgctaaggtgatgttagaagatgggagaagcaaagggtttggctttgtctgcttc
tcctctcctgaagaggcaaccaaagcagtcacagagatgaacggaaggattgtgggctcg
aagccactgtatgttgccctggcccagaggaaggaagagcggaaggctcacctgactaac
cagtacatgcagcgtgtggctggcatgcgagcactccctgctaatgccatcctaagtcag
ttccagcctgcagctggcggctactttgtgccagcagtcccacaggctcagggaaggcct
ccatattacacgcctaaccagctagcacagatgaggcctaatccacgctggcagcaaggc
gggagacctcaaggcttccaaggaatgccaagtgctatacggcaatctgggccccggcca
gctcttcgccatctggctccaactggtaatgctccggcctctcgtggccttcctactacc
gctcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggtgttcctgcggctgtgcca
agccttgcgcctcgggctgcagttgctgccgctgctcccagggctgtggctccatacaaa
tatgcctccagtgtccgcggccctcaccctgcgattcagccactgcaggcaccacagcct
gcagtccatgtccaggggcaggagcctctgactgcctcgatgctggccgcagcacccccc
caggaacagaagcagatgctgggggagcgtttgttcccactgatccaaacaatgcattca
aatctggctggaaagattacggggatgctgctggaaattgacaattctgagctgctccac
atgctggagtcacctgagtccctccgttccaaggtggatgaagctgtggcggtcctgcag
gctcatcatgccaagaaagaagctgcccagaaggtgggggtgggcactgttgctgctgct
gctacctcttag
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