KEGG   Phodopus roborovskii (desert hamster): 127225437
Entry
127225437         CDS       T08852                                 
Symbol
Snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
prob  Phodopus roborovskii (desert hamster)
Pathway
prob03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:prob00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    127225437 (Snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:prob03041]
    127225437 (Snrnp40)
Spliceosome [BR:prob03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    127225437 (Snrnp40)
 Complex C
   U5 SnRNP specific factors
    127225437 (Snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160 PROPPIN
Other DBs
NCBI-GeneID: 127225437
NCBI-ProteinID: XP_051044889
UniProt: A0AAU9ZED4
LinkDB
Position
Unknown
AA seq 358 aa
MIEQPKRKGPELPLVPVKRPRHELLLGAAGSGPGAGQQQATPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASSGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatcgagcagccaaagcgcaaaggcccggagctgccactggttcctgtcaagcggccg
cgacatgagttgctattgggagcggccgggtccggtcccggagccggacagcagcaggcg
actccgggagctttgctgcaggcgggacctccaaggtgttcttcccttcaagccccaatc
atgttgctctcaggacacgaaggagaagtatactgctgcaagtttcaccccaatggatcc
accttggcatcgtcaggatttgacagactcatattattgtggaatgtctacggggactgt
gataactatgccacattgaagggacatagtggagcagtaatggaactgcattataacaca
gatggcagcatgctcttctcagcatcaacagataaaactgtggctgtgtgggatagtgaa
acaggcgagagggttaaaaggctgaagggtcatacttcctttgtgaactcctgttatcca
gcccggcggggcccacagcttgtctgcactggcagcgacgatggtacagttaagctttgg
gatatccgcaagaaagcagctatccagacatttcagaacacataccaggtgttagctgtg
accttcaatgacacaagcgatcagattatctctggtggaatagacaatgatatcaaggtt
tgggacctgcgtcaaaacaagttaacctataccatgagaggccatgctgattctgtaacc
ggcttgagtttaagttctgagggatcttatctcttgtccaatgcaatggacaatacagtt
cgagtctgggatgtccggccctttgctccgaaagagagatgtgtgaagatatttcaagga
aatgtgcacaactttgaaaagaaccttctacggtgttcttggtcacctgatggaagcaag
atagccgctggctcagcggacaggtttgtgtacgtgtgggacaccacaagcagaaggatc
ctgtataagctgcctggccatgctggctctatcaacgaagtggcttttcaccctgatgag
cctatcatcctctcagcatccagtgataagaggctgtatatgggtgagatccagtga

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