KEGG   Phodopus roborovskii (desert hamster): 127225678
Entry
127225678         CDS       T08852                                 
Name
(RefSeq) LOW QUALITY PROTEIN: WD40 repeat-containing protein SMU1-like
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
prob  Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:prob00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:prob03041]
    127225678
Spliceosome [BR:prob03041]
 Complex B
  Other components
   Complex B specific factors
    127225678
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd LisH_TPL WDR90_beta-prop_4th Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_Vps41 WD40_MABP1-WDR62_1st Ge1_WD40 Beta-prop_NWD2_C Beta-prop_Nup120_160 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_VPS8 Beta-prop_IP5PC_F TFIIIC_delta Beta-prop_DCAF12 DUF7165 VPS8_N KNTC1_N Beta-prop_NOL10_N PROPPIN LisH zf_topless
Other DBs
NCBI-GeneID: 127225678
NCBI-ProteinID: XP_051045140
LinkDB
Position
Unknown
AA seq 513 aa
MSIEIESSDVIRLIMQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQD
GHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCALXPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtcgatcgaaatcgagtcttccgatgtgattcgtcttatcatgcagtacttgaaggag
aacagtttacatcgggcattggccaccttacaggaggagactactgtttctctcaatact
gtggacagcattgaaagtttcgtggctgatattaatagtggccattgggatactgtgtta
caggctatacagtctctgaaattgccagacaaaacccttattgatctctatgaacaggtt
gttttggaattgatagaacttcgtgaattgggtgctgccaggtcacttctgagacagaca
gaccccatgattatgttgaagcaaacacaaccagagcgttatattcatctggaaaacctc
ttagccaggtcctactttgatcctcgtgaggcataccccgatggaagtagcaaagagaaa
aggagagcagcaattgcccaggcattagctggggaggtcagtgtggtgcctccatctcgc
ctcatggcattgctgggacaggcattgaagtggcagcagcaccaaggattgcttcctcct
ggtatgaccatagatttgtttcgaggcaaagcagctgtcaaagatgtggaggaagaaaag
tttcctactcagctgagcaggcatattaagtttggtcagaaatcccatgtggagtgtgct
cggttctctccagatggtcagtatctggtcactggatctgttgatggatttattgaagtg
tggaacttcactacgggaaaaatcaggaaggatctaaagtaccaggcccaggataacttc
atgatgatggatgatgctgtcctctgcatgtgtttcagcagagatacagaaatgttagca
actggtgcccaagatggaaagattaaggtgtggaagattcagagtggacagtgtttaaga
agatttgaaagggcacatagtaaaggtgtcacctgtctaagcttttctaaggatagcagt
cagatccttagtgcgtcttttgaccaaacaataagaattcatggtttaaaatctggaaaa
acactgaaagaatttcgaggtcattcctcctttgttaatgaggcaacatttacacaagat
ggacattacattatcagtgcatcttctgatggcactgtgaagatctggaatatgaagacc
acggaatgttcaaatacctttaagtccttgggcagtactgcaggaacagatattactgtc
aatagcgtgattctgcttcctaaaaacccagagcactttgttgtgtgcaaccgatcaaac
acagtggtcatcatgaacatgcaggggcagattgtgagaagcttcagctctggtaaaaga
gaaggtggtgacttcgtgtgctgtgcactcntcccccggggtgagtggatctactgtgtc
ggggaggacttcgtgctctactgcttcagtacagtcactggcaagctggagagaacgctg
actgtacatgagaaggatgtgattggaattgcacaccacccgcatcagaacctgatagct
acctacagtgaagatggactcctgaagctctggaaaccctaa

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