Phodopus roborovskii (desert hamster): 127225819
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Entry
127225819 CDS
T08852
Symbol
Tnrc6b
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127225819 (Tnrc6b)
03036 Chromosome and associated proteins [BR:
prob03036
]
127225819 (Tnrc6b)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127225819 (Tnrc6b)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127225819 (Tnrc6b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_occluded
RRM_1
M_domain
Motif
Other DBs
NCBI-GeneID:
127225819
NCBI-ProteinID:
XP_051045375
LinkDB
All DBs
Position
Unknown
AA seq
1808 aa
AA seq
DB search
MQTNEGEVEEESCSKVEQEDFVMEGHGKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKK
KKEATQKVTEQKTKVPEVTKPSLSQPTAASPIGSSPSPPVNGGNNAKRVAVPNGQPPSAA
RYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGPPPCTAPGANPNNNAQVTGTL
LQNESGTAPETTLGGAAASNYANSTWGPGASSNNGASPNPIHIWDKVIVDGSDMEEWPCI
ASKDTESSSENTTDNNSASNPGSEKSTLPGSTTSNKGKGSQCQSASSGNECNLGVWKSDP
KAKSVQSSNPTSDNNSGLGNWRNVSGQDRIGPGSGFSNFNPNSNPSAWPALVQEGTSRKG
VLETENSNSSAQVNTAVQASREQQSKMENAGVNFIVSGREQAQIHNTDGPKNGNTNSLNL
SSPNPMENKGMPFGMGLGNTSRSTDAPSQSTGDRKTGNVGSWGAARGPSGTDTVSGQSNS
GNNGNNGKDREDSWKGAPVPKSTGSKNDLWDSNRSTGGSWNFGPQDSNDNKWGEGNKMTS
GVSQGEWKQPTGSDELKIGEWSGPNQPNSSTGAWDNQKGHPLPENQGNAQAPCWGRSSSS
AGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWG
QTQIKQDTVWDIEEVPRPEGKSDKGTEGWESTATQTKNSGGWGDAPSQSNQMKSGWGELS
ASTEWKDPKSTGGWNDYKNNNSSNWGGRADEKTPSSWNESSCKDQGWGGGRQPSQGWTSG
KNGWGEEVDQVKSNNWESSANKPVSGWGEGGQNEIGTWGNGGNANLASKGGWEDCKRSPA
WNETGRQPNSWNKQHQQQQQQPPPPQPEASGSWGGPPPPPPGNVRPPNSNWSSGPQPTTP
KDDEPSGWEEPSPQSISRKMDIDDGTSAWGDPNSYNYKNVNLWDKNSQGGPPPREPNLPT
PMTGKSASVWSKSTPPAPDNGTSAWGEPNESSPGWGEMDDSGASATGWGNTPASAPNAMK
PNSKSMQDGWGESDGPVTGTRHPSWEEEDDGGVWNTTSSQGSTSSHNSASWGQGGKKQMK
CSLKGGNSDSWMNPLAKQFSNMGLLSQTEDNPNSKMDLSVDKKFDVDKRTMNLGDFNDIM
RKDRPGFRPPNSKDLGTADSGPYFEKGGNHGLFGNSTAQSRGLHTPVQPLSSSPGLRAQV
PPQFISPQVSASMLKQFPNSGLNPGLFNVGPQLSPQQIAMLSQLPQIPQFQLACQLLLQQ
QQQQQLLQNQRKISQAVRQQQEQQLARMVSVLQQQQQQQQQQQRQPSMKHSPSHPVGPKP
HLDNMVPNALNVGLPDLQTKGPIPGYGSGFSSGGMDYGMVGGKEAGTESRFKQWTSMMEG
LPSVATQEATMHKNGAIVAPGKTRGGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKSPPTN
KIGSKSSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGTATSPIVDTDHQLLRDN
TTGSNSSLNTSLPSPGAWPYSASDNSFTNVHSTSAKFPDYKSTWSPDPIGHNPTHLSNKM
WKNHISSRNTTPLPRPPPGLTNPKPASPWSSTAPRSVRGWGTQDSRIASASTWSDGGSVR
PSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTALHM
CVLGNTTILAEFATEDEVSRFLAQAQPPTPAATPSAPATGWQSLETSQNQADPVGPALNL
FGGSTGLGQWSSSTGGSSGADLAGTSLWGPPNYSSSLWGVSTVEDPHRMGSPAPLLPGDL
LGGGSDSI
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaatgagggagaagtagaggaagaaagctgttccaaggtggaacaggaggat
tttgtaatggaagggcatggcaagactccacctcctggagaagaaagcaaacaagagaag
gagcaagaaagggaagaacagttaatggaagacaagaaaaggaagaaagaggataaaaag
aaaaaagaagccacccagaaggtcacggaacaaaaaaccaaagtgcccgaagtgacgaaa
ccaagtttaagccaaccaacggccgccagcccaattggcagctctccatcgccaccagtc
aatggtggcaacaatgccaaaagggtggcagtgccgaacggacaaccgccaagcgccgcc
cgctacatgcctcgggaggtgccaccgcgattccgttgccagcaggaccacaaagtgtta
ctaaaacgtgggcagccccctccaccgtcctgcatgctccttgggggtggggcagggcct
cctccctgcacagcacctggagcaaatccaaacaacaacgcacaagtgacaggaacgctg
ctgcagaacgagagtgggactgcgccagagacaacccttggaggtgctgctgcttcaaat
tatgcaaattccacttggggcccgggagcctcctccaacaacggcgcctcccccaaccca
attcacatctgggacaaggtgattgtagacgggtctgacatggaagagtggccttgcatt
gccagcaaagacactgaatcttcttccgaaaacaccaccgataacaacagtgcctccaac
cctggctctgagaagagtactctgccaggaagcaccactagcaacaaaggcaaaggaagc
cagtgccagtctgcaagttctggaaacgaatgtaatcttggggtctggaagtctgaccct
aaggctaaatctgttcaatcttccaaccctacttcagacaacaacagtggactgggaaat
tggaggaatgtgagtggtcaagatagaattggacctggctctggcttcagcaactttaac
ccaaacagcaacccatctgcctggccagcattggtccaagaaggaacttctaggaagggg
gtgttggaaacagaaaatagtaattccagtgcacaagtgaacacagcagttcaggcatcc
agggaacagcagtcaaagatggaaaatgcgggtgttaattttattgtctctggcagagaa
caggctcaaattcataacactgatggaccaaaaaatggaaacactaactccttgaactta
agttcaccaaaccccatggaaaataagggaatgccctttgggatgggcttggggaacacc
tccaggagcactgatgccccttcacaaagcactggagatcgaaagactgggaatgttggg
tcttggggtgcagctagggggccttctggaactgacacagtctctggacaaagcaattct
ggaaataatgggaacaatggaaaagacagagaggactcctggaaaggagctcctgttcca
aaatcaactgggtcaaaaaatgatttgtgggatagtaataggtctacgggtgggtcctgg
aactttggccctcaggactctaatgacaacaaatggggtgaagggaacaaaatgacatct
ggggtctctcagggagaatggaaacagccgactgggtctgatgagttgaaaattggagaa
tggagtggtccaaaccaaccaaattctagcactggagcatgggacaatcaaaagggccac
cccctccctgaaaaccaaggcaatgcccaggctccctgttggggaaggtcttccagctcc
gcaggaagtgaagtaggaggtcaaagcactggaagcaaccacaaagcaggaagtagtgac
agtcataattctggccgtcggtcatacaggcccacacatcctgattgccaggctgtcttg
cagactcttttgagtcgaactgatttggatcccagggtgctctcaaacactggctggggc
caaactcaaattaagcaggacacagtgtgggatattgaagaggtgccaaggcctgaaggg
aaatctgacaaaggaactgaggggtgggagagcactgccacacagaccaagaactcaggg
ggctggggagatgcacccagccaaagcaatcaaatgaagtctggatggggggagctctca
gcctcgaccgagtggaaggaccccaagagcacaggaggctggaacgactataagaacaac
aactcttctaactggggaggacgagcagatgaaaagacaccttcctcttggaatgagagt
tcctgcaaggatcaggggtggggaggtgggcgccagcccagccaaggatggacttctggg
aagaatggttggggtgaggaggttgatcaagtaaaaagtaacaattgggaaagttcagca
aataagcctgtatctgggtggggtgaaggagggcagaatgaaattggaacttggggtaat
ggtgggaatgcaaacctagcttcaaaaggtgggtgggaagattgcaaaagatcccctgca
tggaatgagacaggtagacagcccaattcctggaataaacaacaccaacagcagcagcag
cagccaccgccaccacagccagaggcttctggttcatggggaggtccacccccaccacct
ccaggcaatgttcgacctcctaattccaactggagcagtgggccccagcctacaactcct
aaggatgatgaacctagtggttgggaggagccatccccacagtcaattagcagaaaaatg
gacatcgatgatggcacttcagcttggggagaccctaacagttataactacaagaatgta
aacctatgggataagaattcccaagggggccctccgcctcgagaaccaaacctgcctacc
ccaatgactggaaaatcagcatcagtctggagcaaaagcacaccacctgctccagataat
ggaacttcagcctggggtgagccaaatgaaagtagtcctgggtggggtgaaatggatgat
tcaggagcatcggccaccggctggggaaatacacctgccagcgctcccaatgccatgaaa
cccaattctaaatctatgcaagacggctggggggagagtgacggaccggtcacaggaact
cgccatcctagctgggaagaagaggatgatggaggagtctggaataccaccagctctcag
ggaagcacttcctcccacaactcagccagctggggacaaggaggaaagaaacaaatgaag
tgctcactaaaaggaggaaatagtgattcatggatgaatcctcttgccaaacagttttca
aatatgggattgctgagtcaaacagaagataacccaaacagcaaaatggatttgtctgta
gataagaaatttgatgtggacaagcgaacaatgaatctcggggattttaatgatatcatg
aggaaggatcgacctgggttccgtccacctaattccaaagacttgggaaccgcagacagt
gggccttactttgagaagggtggcaatcacggtttgtttggaaacagcacagcacaatcg
agaggcctgcacactccagtgcagccactgagttcttctcctggtctccgggcacaagtg
cctccccagtttatctccccccaggtttctgcctcaatgctcaagcagttccccaacagt
ggcctgaatccaggtctctttaatgtggggccccagttatctcctcaacaaattgccatg
ctgagccagcttccacagattccccagtttcagttggcatgtcagcttctcctgcaacag
cagcaacagcagcagttgctacagaaccagagaaagatttctcaagcagtacgccagcaa
caagaacagcagctggcaaggatggtgagtgttctccagcagcagcaacagcaacagcag
cagcagcaacggcagcctagcatgaagcattcaccatctcatcctgttggacctaagcca
catttggacaacatggtacccaacgcactgaatgtggggctcccagaccttcagaccaaa
gggccaatccctggatatggttctggcttcagctctggcggcatggactatggtatggtt
ggtggcaaggaggctgggactgagtctcggttcaaacagtggacctccatgatggaaggg
ctgccttctgtggccacacaagaagccaccatgcacaaaaatggcgctatagtggcccct
ggtaagacccgaggaggatcaccatacaaccagtttgatataatcccaggtgacacgctg
ggtggccatacgggtcctgctggtgatagctggttacctgccaaatctccaccaactaat
aaaatcggaagtaaatccagcaatgccagttggcctccagaattccaaccaggagtgcca
tggaaaggtatccaaaatattgaccctgaatctgacccctatgtgaccccaggaagtgtg
ctagggggtacagccacatctcctattgtagatactgaccaccaactgctgcgggataac
accacagggtctaattcttccctcaacacctcgctgccttcacctggtgcctggccctac
agtgcctctgacaactcctttaccaacgttcatagcacttcagcaaagttccctgattac
aaatccacgtggtccccagatcccataggacacaaccccactcatctctccaacaagatg
tggaaaaaccacatctcctccaggaacactacaccgctgccccgcccacctcctggcttg
accaaccccaaaccggcatccccctggagcagcacagcacccagatcagtcaggggatgg
gggacacaggactctcggattgcctcggcctctacctggagtgatggtggctctgtccgt
cctagttactggttggttcttcacaatctcactccacagattgatgggtcaaccttgaga
acgatctgcatgcagcatggtccactgctgacattccatctgaatctaacccagggcact
gccctgatccggtacagcaccaaacaagaggcagccaaggcccagactgcactgcacatg
tgtgtgttgggaaacactaccatcctggccgagtttgccactgaggatgaagtcagccgc
tttctggctcaagctcagccccctacacctgcagcaaccccaagtgcacctgccacagga
tggcagtcactggagaccagccagaaccaggcagaccctgttggacctgcgctgaacctt
ttcggtgggtccactgggctcgggcagtggagcagcagcactggtggcagcagtggagcc
gatcttgctggcacttccttgtggggccccccaaactattcttctagcttgtggggagtc
tcaacagtagaagatccccataggatgggcagccctgctcctttactacctggtgacctt
ctgggaggagggtcggattcaatctga
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integrated database retrieval system
