Phodopus roborovskii (desert hamster): 127226302
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Entry
127226302 CDS
T08852
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127226302 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
prob03041
]
127226302 (Sf3b1)
03036 Chromosome and associated proteins [BR:
prob03036
]
127226302 (Sf3b1)
Spliceosome [BR:
prob03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
127226302 (Sf3b1)
Complex B
127226302 (Sf3b1)
Complex C
U2 SnRNP specific factors
127226302 (Sf3b1)
Chromosome and associated proteins [BR:
prob03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
127226302 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
127226302
NCBI-ProteinID:
XP_051046170
LinkDB
All DBs
Position
Unknown
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagctcaaggagtgggccttgattccacaggttattatgac
caagaaatttatggtggaagtgatagcagatttgctggatatgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagcctgggtatcatgcccctgtggcattgcttaatgatataccacagtcaacagaacag
tatgatccatttgctgagcatcgtcctccaaagattgcagaccgtgaagatgaatacaaa
aagcataggcggaccatgataatttccccagaacgtcttgatccttttgcagatggaggg
aagacccctgaccctaaaatgaacgccagaacttacatggatgttatgcgagaacagcat
ttgactaaggaagagagagaaattaggcaacaactagcagaaaaagctaaagctggagaa
ctaaaagtcgtcaatggagcggcagcatctcagcccccctcaaaacgcaaacgacgctgg
gatcaaacagctgaccagactcctggtgccactcctaaaaagctatcaagttgggatcag
gcagagacccctggacacaccccttctttaagatgggatgagacaccaggtcgggcaaaa
ggaagtgaaactcctggagcaaccccaggttcaaaaatatgggatcctacacctagtcat
acccctgcgggagctgctactcctggacgaggtgatacaccaggccacgcaaccccagga
catggtggtgcaacttccagcgctcgcaaaaacagatgggatgagacccctaaaacagaa
agagatactcctgggcatggaagcggatgggctgagactcctcgaacagatagaggtgga
gactccattggtgaaacaccgactcctggagcaagtaaaagaaagtctcgttgggacgaa
acaccggctagtcagatgggtggaagcactcctgttctgactccaggaaaaacaccaatt
ggtacaccagccatgaacatggctacccccactccaggtcatataatgagcatgactcct
gaacagcttcaggcttggcggtgggagagagaaattgatgagcgaaatcgtccactttct
gatgaagaattagatgctatgttcccagaaggatataaggtccttccccctccagctggt
tatgttcccattcgaactccagctcgaaagctgacagcaacacccacacctttgggtggc
atgactggtttccacatgcaaactgaagatagaactatgaaaagtgttaatgaccagcca
tctgggaatcttccatttttaaaacctgatgacattcagtactttgataaactattggtt
gatgttgatgaatctacacttagtccagaagagcaaaaggagagaaagataatgaagtta
cttttaaagattaagaatggaacacctccaatgagaaaggctgccttacgtcagattact
gataaagctcgagaatttggagctggacctttgtttaaccagattcttcctctgttgatg
tctcctacacttgaggaccaagaacgtcatttacttgtgaaagttattgatagaatattg
tataaacttgatgacttagtacggccatatgtgcacaagattcttgtggttatcgagcca
ctgttgattgatgaagattactatgctagagtggaaggcagagagattatttctaatttg
gcaaaggctgctggtctggccactatgatttctaccatgagacctgatatagataacatg
gatgagtatgtccgaaatacaacagctagagcttttgctgttgtagcctctgctctgggc
attccttctctattgcccttcttaaaagctgtgtgcaaaagcaagaagtcttggcaagcg
aggcacactggtattaagattgtacaacagatagctattcttatgggctgtgctatcttg
cctcatctaagaagtttagttgaaatcattgaacatggtcttgtggatgaacagcagaaa
gttcggaccatcagtgctttggccattgctgctttggctgaagcggcaactccatatggt
atcgaatcttttgattctgtgctcaaacctctatggaaaggtatccgccaacacagagga
aagggtttggccgctttcttaaaggctattgggtatcttattcctcttatggatgcagaa
tatgccaactactatactagagaagtgatgttaatccttattcgagagttccagtctccg
gatgaagaaatgaagaaaattgtattgaaggttgtgaaacaatgctgtgggacagatggt
gtagaagcaaattacattaaaacagagatcctccctcctttctttaaacatttctggcaa
cacagaatggctttggatagaaggaattaccgacagttagtcgatacgactgtggagttg
gcaaacaaagtaggagcagcagaaattatatctaggattgtggatgatctgaaagatgaa
gctgaacagtacaggaaaatggtgatggaaacaattgagaaaattatgggcaatctaggt
gcagcagatattgatcataaacttgaagaacaactgattgatggtatactgtatgctttc
caagaacagactacagaggattcagtaatgttgaatggctttggaacagtagttaatgct
cttggcaaacgagtcaaaccatacttgcctcagatctgtggtacagttttgtggcgttta
aataacaagtcagcaaaagttcgacaacaagcagctgacttgatttccagaactgctgtt
gttatgaagacttgtcaagaggaaaaactgatggggcacttgggtgtagtactgtatgaa
tatttgggtgaagaataccctgaagtattgggcagcattcttggagcactgaaagctatt
gtaaatgtaataggtatgcataagatgacaccaccaattaaagatctcctgcctcgactc
acccccatcttgaagaataggcatgaaaaagtacaggagaattgtatcgatcttgttggg
cgcattgctgacaggggagctgaatatgtatctgccagagaatggatgagaatttgcttt
gagcttttagagctcttaaaagctcacaaaaaagctattcgaagagctaccgtcaacact
tttggttatatcgcaaaggccattggccctcatgatgtactggctacacttttaaacaac
ctcaaagttcaggaaaggcagaacagagtttgtactactgtagcaattgccattgttgct
gaaacatgctcacccttcacagtactccctgccttaatgaatgaatacagagttcctgaa
cttaatgtgcagaatggagtgttgaagtcactctccttcttgtttgagtatattggtgag
atgggaaaagactacatctatgctgtaacacctttacttgaggatgcattaatggatagg
gaccttgtacacagacagacagctagtgcagtggtacaacacatgtcacttggtgtgtat
ggatttggctgtgaagattctctgaatcacttattgaactatgtatggcctaatgtgttt
gagacatctccacatgtaatccaggcagttatgggagctctggagggcctaagagttgct
attggaccatgcagaatgttgcagtattgcttacagggtttgtttcacccagctcggaaa
gtcagagatgtgtattggaaaatttacaactccatctacattggctcccaggatgctctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgttatgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
