Phodopus roborovskii (desert hamster): 127226503
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Entry
127226503 CDS
T08852
Symbol
Col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob04151
PI3K-Akt signaling pathway
prob04382
Cornified envelope formation
prob04510
Focal adhesion
prob04512
ECM-receptor interaction
prob04820
Cytoskeleton in muscle cells
prob04926
Relaxin signaling pathway
prob04933
AGE-RAGE signaling pathway in diabetic complications
prob04974
Protein digestion and absorption
prob05146
Amoebiasis
prob05165
Human papillomavirus infection
prob05200
Pathways in cancer
prob05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
127226503 (Col4a4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127226503 (Col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127226503 (Col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127226503 (Col4a4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
127226503 (Col4a4)
09154 Digestive system
04974 Protein digestion and absorption
127226503 (Col4a4)
09158 Development and regeneration
04382 Cornified envelope formation
127226503 (Col4a4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
127226503 (Col4a4)
09162 Cancer: specific types
05222 Small cell lung cancer
127226503 (Col4a4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
127226503 (Col4a4)
09174 Infectious disease: parasitic
05146 Amoebiasis
127226503 (Col4a4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
127226503 (Col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
prob04147
]
127226503 (Col4a4)
00536 Glycosaminoglycan binding proteins [BR:
prob00536
]
127226503 (Col4a4)
Exosome [BR:
prob04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127226503 (Col4a4)
Glycosaminoglycan binding proteins [BR:
prob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127226503 (Col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127226503
NCBI-ProteinID:
XP_051046529
LinkDB
All DBs
Position
Unknown
AA seq
1681 aa
AA seq
DB search
MRCFFRWTKPSATGPWSLIFILFTIRYEYGSSKKYGSPCGGRNCSVCQCFPEKGSRGQPG
PLGPQGPIGPLGPPGPTGIPGEKGLRGDSGLPGAAGEKGDKGPTGVPGFPGLEGIPGHPG
PPGPRGKPGVDGFSGSRGDPGFPGERGAPGPGGPPGHPGENGEKGRSVFISGGVKGVQGD
RGDPGLPGLPGSRGAQGSTGPMGYAGAPGPAGPIGHPGSPGLKGNPAAGIKGQRGEAGEV
GQHGPPGPTLFVQPPDLNLYKGEKGIKGIPGMIGPPGPPGRKGEPGIGTKGEKGIPGFPG
PRGEPGSHGSPGFPGFKGEQGVPGDPGMFGFLGPKGDPGDRGYPGPPGILVTPFPLLKGP
PGDPGPPGRYGETGDVGPPGPPGPPGRPGDTCPGVVGPPGPPGIPGPPGFPGEAGIPGGL
NCAPGKPGKPGLPGLPGAPGPQGPPGSDVIYCSPGCPGPMGEKGKIGPPGRSGAKGEKGN
EGLCACPPGPMGPPGPPGVPGRQGSKGDSGLPGWPGEKGDPGQPGEEGPPGPPGKPGALG
PPGHKGAKGDMVTSRVKGQKGEKGHDGPPGFPGPHGQDGQDGRAGERGDPGPRGEHKDAT
LGEKGLPGLPGPPGKPGPMGPPGLGFPGPPGDRGQPGEPGRPGMRGFDGMKGQKGDTVSS
NVTYPGNPGPPGFDGPPGLKGFPGPPGPAGMRCPDGQKGQQGKPGRSGIPGPPGFRGNMG
DPGIGGEKGSSPIGPPGPPGFPGMDGQKGIPGDPAFGDPGPPGERGLPGVPGMKGHKGYP
GCPGAEGPPGIPGSPGLKGPKGREGSPGFPGIPGPPGHSCEKGVPGIPGQPGLPGSPGDP
GSPGWKGQPGDMGPSGPAGMKGLPGLQGIPGADGLSGLPGIPGPTGEDGPPGLPGPKGHP
GLPGYPGFPGERGRSGPDGQPGRKGEMGEKGWPGLLGDLGERGAKGDRGPPGDTGEIPII
LKLGDHGEAGPPGEDGFPGPRGDKGSPGMHGGRGDPGRDGPPGLHRGQPGINGHPGPPGP
PGPPGIPGPRGVIGFPGFPGDQGDAGSPGPPGFPGDNGARGPKGNKGDPASQRGPPGLKG
EPGSPGYQGHPGAPGEPGFPGAEGSRGPPGRPGGVGSSGPPGRPGDPGMPGLKGHPGELG
DPGPRGSPGDLGRPGPPGVKGLPGSPGLNGLHGLKGEKGAKGTSGLHEMGPPGPMGVPGL
KGERGDPGSPGISPPGLSGEKGLPGPPGTPGPSGPAGAPGRPAKGDIPHPGPPGDWGPPG
PDGPRGAPGPPGSPGNVDFLKGDPGDHGLPGPPGSRGPPGPPGCQGAPGCDGKDGQKGPM
GFPGPPGPPGLPGAPGEKGLPGFPGRKGPIGPPGCRGEPGPPADVDSCPRIPGLPGVPGP
RGPEGAVGPLGQRGPPGPGCKGEPGLDGRRGQDGIPGSPGPPGHRGDTGEAGCPGTPGPP
GPTGDPGPKGFGPGYLSGFLLVLHSQTDQEPACPMGMPRLWTGYSLLYMEGQEKAHNQDL
GLAGSCLPVFSTLPFAYCNIHQVCHYAQRNDRSYWLSTGAPLPMMPLSEEEIRPYISRCA
VCEAPAQAVAVHSQDQSIPPCPRAWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLEDFR
AAPFLECQGRQGTCHFFANEYSFWLTTVNPDGQFSSGPSPDTLKDLQAQRQKISRCQVCM
K
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgaggtgctttttcagatggaccaagccctcagccacaggcccgtggtcactaatattt
attctctttaccatacgatatgaatatggcagtagcaagaaatatggcagcccctgtgga
ggaagaaactgctctgtctgccagtgttttcctgaaaagggatctcggggtcagccagga
cccctgggaccacagggaccaatagggcccttaggacccccgggacccactggaattcca
ggagagaaaggactgagaggtgacagtggcctgcctggagcagcaggagagaaaggagac
aagggtccaacgggtgtccctggatttccaggtttggagggcatacctggtcacccaggg
cccccgggacccagaggcaaacctggtgtggatggcttcagtggctcaagaggtgatccg
ggatttccaggagagagaggagctcctggcccaggggggccccctggtcaccccggggaa
aatggagaaaaaggaaggtcagtgttcatttcaggtggtgttaaaggtgttcagggagac
cgaggggacccaggactgcccggcttaccaggatccaggggtgcacaaggatcaacaggg
cccatggggtacgctggtgcaccagggccagcaggacctataggtcatcctgggagtcct
gggttgaagggaaatcctgctgcggggataaaagggcaaaggggagaggcgggtgaagtt
ggccagcacggtcctcctgggcccaccctgtttgtacaaccacctgatctgaatctctac
aaaggagaaaagggtataaaaggaattcccggaatgattggacctccaggacctccagga
cgcaagggagagcctggtatcgggacaaaaggagagaaaggtattcctgggttcccagga
ccccggggtgagcctggttcccatggatctccaggttttccaggattcaagggggaacag
ggagtgcctggagaccctgggatgttcggatttcttggtccaaagggggatcctggagat
cgagggtacccaggaccaccgggcattttggtaactccctttcctctactcaaaggtccc
ccaggggacccaggaccccctggccgctatggagaaactggagatgttggaccaccaggt
cctcctgggcctccaggcagaccaggggatacctgtccaggcgtggtgggacctcctggg
ccaccagggattcctggtcccccaggatttccaggggaagctggcattcctggaggactc
aactgtgccccaggaaaaccagggaagccaggactacctggcctgcctggagcaccagga
ccacagggcccccctggatcagatgttatctattgtagccctgggtgccctggaccaatg
ggagaaaagggaaaaataggtcccccaggaagaagcggagccaaaggagaaaaaggaaat
gagggactctgtgcctgtccacctggtcccatgggaccccctggccctccaggagttcct
ggaagacaaggaagtaaaggagattcagggcttcctggctggcctggagagaagggtgat
ccaggccagcctggtgaggaaggacctccggggccaccaggaaaacctggtgccttgggg
ccacctggccacaaaggggcaaagggtgacatggtcacatcaagagtgaaaggacaaaaa
ggagaaaaaggacatgatgggccaccaggatttccagggccacatggacaagatggtcag
gatggacgagctggagaaagaggggatcctgggccccgaggtgaacacaaggatgcaacc
ctgggtgagaaagggcttcctggactgccgggtcctccagggaaaccaggaccaatgggg
cctccaggactgggatttccaggcccaccaggagacagaggtcaaccaggagagccaggg
cgtccaggcatgaggggatttgatggcatgaaagggcagaaaggtgacactgtttcttct
aacgtaacctacccagggaatccaggccctccaggttttgatggacctccaggtctgaag
gggtttccaggtccccctggtcctgcaggtatgagatgtccagatgggcagaaaggccag
cagggcaaaccaggaaggtctggaattccaggtccacctggttttcgtggtaacatggga
gatccaggaatcggaggtgaaaaggggagctcccctattggacctccaggtccacctggg
tttccaggaatggacggccagaaaggaatcccaggagaccctgcattcggtgaccctgga
ccccctggagaaaggggtcttcctggagtgccaggcatgaaaggacacaaaggttaccca
ggatgcccaggggctgaagggccacctggcatccctggatctccaggtctcaaaggtccc
aaaggcagagaaggaagccctgggtttccagggataccaggcccccctggccactcctgt
gaaaaaggtgttccagggatcccaggacaaccaggacttcctggatctcccggtgatcca
ggttccccaggttggaaaggccaaccaggagacatggggccttctggaccagctgggatg
aagggcctccctggccttcaaggaatcccaggagcagatggtctctcagggctccctggg
attccaggccccactggggaagatggcccacctggccttccaggcccaaaggggcaccca
gggctgcctggctaccctggttttccaggagagagaggaaggtcaggcccagatggacaa
cctggaagaaagggagaaatgggagagaagggctggcctggcttactgggggacctggga
gagagaggcgccaaaggagacagaggacctcccggcgatacaggagaaatacccatcatt
ttgaaactgggagatcatggggaagctgggcctccaggagaggatgggtttccgggacct
agaggtgataaaggaagcccaggaatgcacgggggaagaggagatcccggaagagatgga
ccacctggactgcacagagggcagcctgggattaatgggcatcctgggcctcctggcccc
cctggccctccaggcatccctggaccaaggggagtcattggttttcccggatttccaggt
gatcagggtgatgcaggttctccaggtccccctggattcccaggagataatggagcaaga
ggacctaaaggaaacaaaggtgaccctgccagtcagcgtggtccacctggtctgaagggt
gagcctggcagccctggataccaaggacatcctggagcccctggagagccaggctttcct
ggagcagaaggatctagaggaccaccaggcagacctggaggggttggctcttctggacca
ccagggcgtccaggtgacccagggatgcctgggctgaagggccaccctggagaattggga
gatcctgggccaaggggttccccaggagatttagggaggcctggtcctcctggagtaaaa
gggctccccgggtctcctggtctgaacggcttgcacggtctcaagggtgagaaaggagcc
aaaggtacctcaggtttgcatgaaatgggtccacctgggccaatgggagtacctgggcta
aagggagagagaggcgaccctgggagcccaggaatttctcccccaggcctttctggagaa
aaaggcctcccaggacccccagggacaccaggaccatctggtcccgccggtgccccggga
agacctgctaaaggtgacatacctcatccaggtccacctggagactggggacctcctggc
cctgatggcccaagaggagcacctgggcctccaggttcccctgggaacgtcgactttctg
aaaggggatccaggtgaccatggtttacctggaccacctggctcccgaggcccaccaggc
cctccagggtgtcagggtgccccaggatgtgatggcaaagatggccagaaaggaccaatg
ggattcccagggcctccagggccacctggccttcctggggcacctggtgagaagggattg
cctggctttcctggaagaaaaggacccataggtcctccaggctgcagaggtgaacctggg
cctcctgccgatgtggattcctgtcctcggatcccaggactccctggagttccaggcccc
agaggaccagaaggagctgtgggaccccttggacagagaggcccccctggaccagggtgc
aaaggagagcctgggctggatggcaggcggggccaggatggcatccctgggtctcccggg
cctccgggacacagaggtgacactggagaggctggctgccctggaacaccaggccctcct
ggtccaactggtgatccagggcccaaggggtttggccctgggtacctcagtggcttcctc
cttgttctccatagtcagacagatcaagagcctgcctgccctatgggtatgcctcggctt
tggaccggatacagcctgttatacatggaaggacaggagaaggcacacaatcaagatctt
ggtttggcagggtcttgtcttcctgtgtttagcacactgccatttgcctactgcaacatc
caccaagtgtgccactatgcccagagaaatgacaggtcctactggctgtctactggggct
cctcttcctatgatgccactctcagaggaagagatccgcccttatatcagccgatgtgct
gtgtgcgaggctccagcccaggcagtggctgtccacagtcaggatcaatccattccaccg
tgtccacgggcgtggaggagcctctggattgggtactcatttctgatgcacactggagct
ggggaccaaggaggaggacaggcgctcatgtcgcctggcagctgcctagaggacttcaga
gctgcaccgttccttgaatgccagggccggcagggaacctgtcacttctttgcaaatgaa
tacagcttctggctgaccactgtgaacccagatgggcagttttcctctggcccatcacct
gacaccttgaaagacttgcaggcccagcgccagaaaatcagcaggtgccaggtctgcatg
aagtag
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