Phodopus roborovskii (desert hamster): 127227506
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Entry
127227506 CDS
T08852
Symbol
Scaf4
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
prob
Phodopus roborovskii (desert hamster)
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prob03021
]
127227506 (Scaf4)
03041 Spliceosome [BR:
prob03041
]
127227506 (Scaf4)
Transcription machinery [BR:
prob03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127227506 (Scaf4)
Spliceosome [BR:
prob03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
127227506 (Scaf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
127227506
NCBI-ProteinID:
XP_051047830
LinkDB
All DBs
Position
Unknown
AA seq
1163 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGSSNALPIAENVTNNEGSPPPPVKASSELVQAPSNSMPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPALDNAVMAQVQAITAQLKTAPTQP
PEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAMEDTKKEDAAVTAAAPAAAAAAAAAAAA
PPTASVATPAIAPAVAVPSAASPPPPQVPFGYPGDGMQQPAYTQHQNMDQFPPRMMGMQQ
DTVHHQVPLPPNGQMPGFGLLSASPFPPVPQPGMPQPGMPQPGMPQPGMPQPGMPQPGMP
QSGMPQPGIPPTPPVQPTFQPTFQPQNEPLSQKPHQQEMEVEQPCVPEVKRHAPESRKSR
SRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGL
PQIKAETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQD
AYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYVPWDKVKPEELESF
CEGGMLDSDTLNPDWKGIPKKPENEVAQNGGAEAPHTEPVSPVPKPLPVPVPPIPGPAPI
TVPPPQVPPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLP
PGFLPPGPPPPITPPVSIPPPHTPPISIPNLVSGARGDAESGDSAKMYGSAVPPAAPTNL
PTPPVTQPVSLLGSQGVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPMMP
PRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGPFVRPGGMPGLGGPGPGPGGPEDR
DGRQQQPQQQQQQPPPQQSQPQQPPPSQQPAQQQQPQQFRNDNRQQFNSGRDQERFGRRS
FGNRVENDRERYGNRSDDRDNSNRERREWGRRSPDRERHRDLEDRNRRSSGHRDRDRDSR
DRESRREKEESRRDKHELTADRAGGNKASEPPLSQVGDLDTVSELDKGEAMATVVKPSEE
SPAEATSSVEPEKDSGSAAEAPR
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgccttcaaccaggagcttttttcacttatggatatgaaacctccc
atctctagagccaagatgattctgattactaaagctgctattaaagctattaagctttat
aagcatgttgttcagatagtagaaaaattcatcaaaaagtgtaaaccagaatacaaagtt
ccaggattatatgttatcgattccattgtgagacagtctcgacatcagtttggtactgat
aaagatgtttttgggccaagattttctaaaaatataactgctacattccaatatttatat
ctctgtccatctgaagataagagtaaaatagttcgtgtgctaaatctttggcaaaaaaat
ggagtattcaaaattgaaattattcaacctcttttggacatggcagcaggaagcagtaat
gctcttcccatagcagaaaacgtcaccaacaatgaagggtcacctcctcccccagtaaaa
gcctcttctgaacttgtacaagcacccagcaactccatgcctactgtcccacagttgccc
agctctgacgccttcgctgctgtggctcagctctttcagaccactcaaggccagcagctt
cagcagatccttcagacttttcaacagcctccaaaaccacagtctcccgcccttgacaat
gctgtgatggcccaggttcaggctatcacagctcagttaaagacagctcctacacaacca
cctgaacaaaaagccgctttccccccacctgaacaaaaaactgcatttgacaagaagctg
ctcgataggttcgattatgatgatgaaccagaagccatggaagacacaaagaaagaggat
gctgctgtcactgctgcagcccctgctgctgctgctgctgctgctgctgctgctgctgcg
cctcccacagcctccgtggccaccccggctatcgctcctgccgtggcagtaccctctgcc
gcctcaccccctcccccacaggtgccatttggttatcctggggacggcatgcagcaacca
gcctatacacagcatcaaaatatggatcagtttccacctcggatgatggggatgcagcag
gacacagtgcaccatcaggttccacttcctcctaatggacagatgccaggatttggactt
ctctcagcatctccatttcctcctgtgccacagcctgggatgccacagcctgggatgccg
caacccgggatgccgcagcccgggatgccgcagcccgggatgccgcagcccgggatgccg
cagtctgggatgccgcagcccgggattcctccaaccccaccagtacaaccaactttccaa
cctacttttcagccacaaaatgagccgctttcacaaaagccacatcagcaggaaatggaa
gtagaacaaccttgtgtcccggaggttaagcggcatgcacctgagagcagaaagtcaaga
tctaggtcagcatccaggtcaccaaaaaggagaaggtctagatctggctccaggtctcgg
agatcccgccaccgacggtctcggtcccggtcgagggacaggcgccggcactcacctcga
tctcggtctcaagaaagaagggatcgagaaaaagagagggaacggcgacagaaaggcctc
cctcagatcaaggcagagactgcaagtgtttgtagtaccacattgtgggtggggcagctg
gacaaaaggactactcaacaagacgttgccagtctcctagaagagtttggtccaattgag
tcaattaatatgattcctcccagaggttgtgcctacatcgttatggttcataggcaagat
gcataccgtgccctgcagaaactgagccggggaaactataaagtgaaccagaaatccata
aagattgcctgggccttaaacaaaggaataaaggcagattataagcagtattgggatgtc
gaactgggtgttacttatgtcccgtgggacaaagtcaaacctgaggagctggagagtttt
tgtgaaggaggaatgttggacagtgacacacttaacccagattggaagggaattcccaag
aagcctgaaaatgaagttgcccaaaatggaggcgcagaagccccccacacggagcctgtg
tcacctgtccctaagcctctgcccgtgcctgtgcctcctatcccaggccctgcgcctata
acagtgccacccccacaggtcccacctcatcagccgggtcctcctgtagttggtgccctg
cagccgcctgctttcacacctcccttaggaatcccccctccaggctttggccctggtgtt
cctcctcctcctcctccaccaccatttttgcgcccaggattcaacccgatgcatttacca
ccaggctttcttcctcctggacccccacctcctataaccccaccagtatccatccctcct
cctcacactccaccaataagcatcccaaacttggtgtctggggctagaggagacgccgag
tctggtgacagcgcgaaaatgtatggttctgctgtgccacctgccgcacccacgaatctg
cccacccctcctgtaacccagcctgtctcacttcttggcagtcaaggagttgcacccggt
cctgtaattgggcttcaggcaccgtctactggtcttcttggtgccagacctggcctgatc
ccactgcagcgcccccccgggatgccaccacctcacttgcagcggtttcctatgatgcca
ccacgccccatgccgccccacatgatgcacagaggtccacctccaggaccagggggcttt
gccatgcccccacctcatggaatgaaagggccctttccaccacatggcccctttgttagg
cctggtggaatgccagggcttgggggcccaggaccaggcccaggaggaccagaagacaga
gatggaaggcagcagcaaccacagcagcagcagcagcagccgccaccacaacagtcacag
ccacagcagccaccaccatcacagcagccagctcagcagcagcagccacagcagtttaga
aatgataacaggcagcagttcaattcaggtagagaccaagaaaggtttggaagaagatct
tttggaaatagggtggaaaatgaccgggaacggtatgggaaccgaagtgacgatagagat
aatagtaaccgtgaacggagagagtgggggagaaggagccctgaccgggagaggcacaga
gacttggaagacagaaacagacgctctagtgggcatcgggacagagacagggattccaga
gatagagagtctcgtagagagaaggaagaaagccgaagggataagcacgagctgacggca
gacagggcgggcggtaacaaagccagtgaacctccccttagccaagtgggagacttagac
actgtctcagaacttgacaagggggaggccatggccacagtggtaaaaccttccgaagag
tcacctgctgaggctacctcatccgttgaacccgagaaggactctggctcggcagcagag
gctcctcgctag
DBGET
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