Phodopus roborovskii (desert hamster): 127228329
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Entry
127228329 CDS
T08852
Symbol
Atxn2l
Name
(RefSeq) ataxin-2-like protein isoform X1
KO
K23625
ataxin 2/2L
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob05014
Amyotrophic lateral sclerosis
prob05017
Spinocerebellar ataxia
prob05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127228329 (Atxn2l)
05017 Spinocerebellar ataxia
127228329 (Atxn2l)
05022 Pathways of neurodegeneration - multiple diseases
127228329 (Atxn2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prob03019
]
127228329 (Atxn2l)
Messenger RNA biogenesis [BR:
prob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127228329 (Atxn2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
DUF5415
Motif
Other DBs
NCBI-GeneID:
127228329
NCBI-ProteinID:
XP_051048897
LinkDB
All DBs
Position
Unknown
AA seq
1099 aa
AA seq
DB search
MLKPQPPQQTSQPQQPPPTQQAVARRPPGGASPPNGGLSGPLPVTTAPPGPPAVSPCLGP
AAAAGSGLRRGAESILSAPPQHQERPGAVAIGSVRGQSTGKGPPQSPVFEGVYNNSRMLH
FLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDTMVF
KPSDVLLVHFRNVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGDSNSDDYDLES
DMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLAREIES
SPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLVSREGKYIPLPQRVREGPRGGVR
CSGSRGGRPGLSSLPPRGPHHLDNSTPGPGSEARGINGGPSRMSPKAQRPLRGAKTLSSP
NNRPSGESSVPPTPAALPFLPVGRMYPPRSPKSAAPAPVSASCPEPPIGSAVVSSASIPV
TSSVVDPGAGSISPASPKISLAPTDVKELPTKEPGRTLEAQELARIAGKVPGLQNEQKRF
QLEELRKFGAQFKLQPSSSPETGLDPFPSRILKEEAKGKEKEVDGLLTSDPMGSPVSSKT
ESILDKEDKPPLAAVGVTEGPEQLPPSCPSQTGSPPVGLIKGDDKEEGPVTEQVKKSTLN
PNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYIPQIHMG
PAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAGPPLV
AATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSST
PQYPSAEQPTPQALYATVHQSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSPVQHQAG
QAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPHGFT
NMAHVTQAHVQTGVTAAPPPHPGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALSASTP
SPYPYIGHPQGEQPGQAPGFPGGADDRILCRVGRSHSRRRQGLAPGSVLCFPPSSLSCDP
AAPLPTASPALSDPDCLLT
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcctcagccgccacaacagacctcccagccccagcagccgccccccacgcaa
caggccgtggcccgtaggcctcccggcggggccagccctcctaacggcgggctctcgggg
ccgctgcccgtcaccacggctcccccggggcctcctgcggtctctccctgcctggggcct
gcagccgctgccgggagcgggcttcgccgcggagccgaaagcatcttgtcggcgccgccg
cagcatcaagagcggccaggggcagtggctatcggcagtgtcaggggacagagcaccgga
aagggacccccacagtcacctgtgtttgaaggtgtctataataattccaggatgctgcat
ttcctaactgctgtggtgggttctacttgtgatgtaaaggtgaaaaatggcaccacttac
gagggcatttttaagactctgagctcaaagtttgaactggcagtagacgcagtgcaccgg
aaagcatctgagccagcaggtgggcctcggcgggaagacattgtggacaccatggtcttt
aaaccaagcgatgttcttcttgtccacttccgaaatgttgacttcaattatgctactaaa
gacaagttcactgactcagccattgccatgaactctaaggtgaatggagaacacaaagag
aaggtgcttcaacgctgggagggcggtgacagtaacagtgatgactacgacctggaatct
gatatgtccaatggatgggatcccaacgagatgttcaaatttaatgaagagaactatgga
gtgaagaccacttatgacagcagtctatcttcttacacggttcccttggaaaaggacaac
tcagaagaatttcggcagcgggagctacgtgcagctcagttggctcgagagattgagtca
agtccccagtaccgcctacggattgccatggaaaatgatgatggtcgaacagaggaggaa
aagcacagtgcagttcagcggcaggggtctgggcgggagagccccagcttagtgtccagg
gaggggaagtatatccctctgcctcaacgagttcgggaaggtccccggggaggagttcga
tgcagtggttctcgaggagggcggcctggccttagctctttgccacctcgtggccctcac
catcttgacaacagcacccctggccctgggtctgaggcacgtggtataaatggaggccct
tcccgcatgtcccccaaggcacagcggcctttgagaggtgccaagactttatcttctccc
aacaataggccttctggagaatcttccgttcctccaacacctgcagctctcccttttctt
ccagtgggccggatgtaccctccacggtctcccaagtctgctgctcccgccccagtctcc
gcttcctgtcctgagcctcccattggttcagcagtagtgtcctctgcctccatccctgtg
acatcatcagttgtggatcctggagcaggctctatttccccagcatcacccaaaatctcc
ctggcccccacagatgtaaaagaacttccgaccaaggagcccggtaggactttggaggcc
caagaactggcccgaatagctgggaaagttcctggccttcagaatgaacaaaaacgattt
cagttggaagaattgagaaagtttggagcccaatttaagcttcaacctagtagctcccct
gagaccggcctagatccatttccttcccggatcttaaaagaagaggccaaaggaaaggag
aaggaggtggatggcctattgacttcagatcccatgggatccccagtttcttcaaagaca
gaatccatattggataaggaagacaaaccacccctggcagcagtaggggttactgagggg
ccagagcagctcccaccatcttgccccagccaaactggcagtcccccagtgggcctcatc
aagggagatgacaaagaggagggccctgttactgaacaagtaaagaagtctactttgaac
cccaatgccaaggagttcaatccaacaaagcctctgctgtctgtgaacaaatctaccagt
actccaacttcaccagggccccgtactcactcaacaccttccataccggtgctgacagca
ggccagagtgggctctacagtccccagtacatctcatatatacctcagatccacatggga
ccagctgtgcaggcgcctcagatgtatccatatcctgtttccaattcggtgcctgggcag
cagggcaagtaccggggtgcaaaaggctcacttcccccgcagcgctcagaccaacaccag
ccagcctccgcccctccgatgatgcaggctgctgctgctgctgctggcccacccctggtg
gctgccacaccttattcttcctacatcccctacaacccacagcagttcccaggccaacct
gccatgatgcagcccatggcgcactacccttcacagccggtgtttgcccctatgcttcaa
agtaacccacgaatgttgacatcgggaagccacccccaggccattgtgtcatcctccact
cctcagtacccctctgcagagcagcctacccctcaagccctctatgccactgttcaccag
tcctatccacaccatgctacacagctccatggccaccagccgcagccagccaccacacct
actgggagccaaccacagtcccagcatgcggcccctagtcctgttcagcaccaggcaggg
caggccccacacctgggcagtggacagccacagcagaatctgtaccatccaggggcccta
acaggcacgccgccttctctaccaccgggaccttctgcccagtcccctcagagcagcttt
ccccagccagctgctgtgtatgccatccatccccaccagcagctgccccacggcttcacc
aacatggcccatgttacccaggcccatgtccaaactggagtcacagcagccccgccccca
caccctggggcacctcacccgccccaggtgatgctgctgcatcccccccagggccatggg
ggccccccccaaggcgcggtgcccccgagtggggtgcctgcactctcagcttccacaccc
tcaccctacccctacatcggacacccccaaggtgagcagcctggccaggcgcctggattt
ccaggaggagccgatgacaggattctatgtagggtgggcagaagccacagtcgccgccgc
caggggcttgctcctggctctgtcctttgcttccctccgtcctcgctcagttgtgatcca
gcagcccccctccccactgcctccccagctctcagtgaccccgactgtctcctgacttag
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