Phodopus roborovskii (desert hamster): 127228856
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Entry
127228856 CDS
T08852
Symbol
Ddb1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
prob
Phodopus roborovskii (desert hamster)
Pathway
prob03420
Nucleotide excision repair
prob04120
Ubiquitin mediated proteolysis
prob05161
Hepatitis B
prob05170
Human immunodeficiency virus 1 infection
prob05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
prob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127228856 (Ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
127228856 (Ddb1)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
127228856 (Ddb1)
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
127228856 (Ddb1)
05161 Hepatitis B
127228856 (Ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
prob04121
]
127228856 (Ddb1)
03400 DNA repair and recombination proteins [BR:
prob03400
]
127228856 (Ddb1)
Ubiquitin system [BR:
prob04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
127228856 (Ddb1)
DNA repair and recombination proteins [BR:
prob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
127228856 (Ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
127228856 (Ddb1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
127228856
NCBI-ProteinID:
XP_051049904
LinkDB
All DBs
Position
Unknown
AA seq
1104 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPSRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTIEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSLYPFCSEYL
SAGKHISAHSESCAYLALFLEMFH
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtcgtaacggcgcagaagcctaccgcagtgaacggctgtgtgacc
ggacactttacttctgcggaagatctgaacctgttgattgctaaaaacacaagattggag
atctatgtggtcactgcggagggccttcggccagtcaaagaggtgggcatgtatgggaag
attgcagtcatggagcttttcagacccaagggggagagtaaagacctgttgttcatcttg
actgctaagtacaatgcctgcatcttggagtataagcagagtggtgaaagcattgatatc
attacaagagcccatggcaatgtccaggaccgtattggtcgcccctcagagactggcatc
attggtatcattgaccctgagtgccgaatgattggcctgcgactctatgatggccttttc
aaggtcattcctctagacagagacaataaagagctcaaggcctttaacatccgcctagag
gaattacatgtcattgatgtgaagttcctgtatggttgtcaagcgcctaccatttgcttt
gtctaccaggatcctcaggggcggcatgtgaaaacatatgaggtgtctcttcgagagaag
gaattcaacaagggtccttggaaacaggagaatgtagaagctgaagcttcaatggtgatt
gcagtgcctgagccttttggaggtgccatcatcattggacaggaatcaataacctatcat
aatggtgataaatacctggcaatcgctcctcctatcatcaagcaaagcactattgtgtgc
cacaatcgggtggaccctaatggctcacgataccttctgggagatatggaaggacggctc
ttcatgctgcttttagaaaaggaagagcagatggatggcactgttaccctcaaggatctc
cgagtggaactccttggagagacctccattgcagagtgcctaacatacctcgataatggc
gttgtatttgtcgggtctcgcctaggtgattcccagctcgtaaagctcaacgtcgacagc
aatgagcaaggctcttatgtagtggccatggaaacttttaccaatttaggacccatcgtg
gatatgtgtgtggtggacctggagaggcagggacagggtcagctggtcacttgctctggg
gctttcaaggaaggttccttgcggatcatccggaacggaattggaatccatgagcatgcc
agcattgacttaccaggcatcaaaggtttatggccactgcggtctgaccccagtcgggag
actgatgacactttggtactctcttttgtgggccagacaagagttctcatgctaaatgga
gaagaagtggaagaaacagaactgatgggctttgtggatgatcagcagactttcttttgt
ggcaatgtggctcatcagcaacttatccagatcacttcagcatctgtgaggttggtctct
caagagcccaaagctttggtcagcgagtggaaagagcctcagggcaagaacatcagtgtg
gcctcctgtaacagcagccaggtggttgttgctgtgggaagggcactatactaccttcag
atccatcctcaggagctccggcaaatcagccacacagagatggaacatgaagtggcttgc
ttggatatcaccccattaggggacagcaatgggatgtctccgttatgtgccattggtctc
tggacagacatctcagcccgtatcttgaagctcccatcctttgaactactgcacaaggag
atgctaggtggagagatcattcctcgatctatcctgatgaccacctttgagagcagccat
tacctcctctgtgccttaggagatggggctcttttctactttgggctcaacatcgagaca
ggtttgctgagtgaccgcaaaaaagtgactttgggcacccaaccaacagtgttgaggaca
ttccgttctctttctaccaccaatgtctttgcttgctctgaccggcctactgtcatctat
agcagcaaccacaagttggtcttctccaatgtcaacctcaaggaggtgaactatatgtgt
cctctcaactcagatggctatcctgacagtctggcattggccaataacagcaccctcacc
attggcaccattgatgagatccagaaactccacattcgcacggttcccctctacgaatct
cccaggaagatttgctatcaggaagtatctcagtgctttggggtcctttctagccgcatt
gaagtccaagacactagtggaggcacaactgctctgaggcccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctattctctagcagtactgctcctcacgagacc
tccttcggagaagaggtggaggtgcacaacctcctcatcattgaccagcacacttttgaa
gtgcttcatgcccatcagtttctacaaaacgagtatgccctcagcctagtctcctgcaaa
ttgggcaaagaccccaacacatacttcattgtgggcacagccatggtgtatcctgaagag
gcggagcccaagcaaggccgtattgtggtcttccagtattcagatggaaaactacaaacc
gtggccgaaaaggaagtgaagggggctgtgtactctatggtggagtttaacgggaagctg
cttgccagcatcaatagcacggtgcggctctatgagtggaccatagaaaaggagctccgc
actgaatgtaatcactacaacaacatcatggccctctacctgaagaccaagggtgacttc
atcctggtgggcgacctcatgcgctcagtgctgctgcttgcctacaagcccatggaagga
aactttgaagagattgcccgagactttaatcccaactggatgagtgcagtggaaatcttg
gatgatgacaatttcctgggagctgaaaatgcttttaacttgtttgtatgtcagaaggac
agtgctgccaccactgatgaggagcggcagcacctacaggaggttggtctcttccacctg
ggcgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggcgagact
tccacccctacacaggggtcggtgctctttggcacggtcaacggcatgatagggctggtg
acctcactgtcagagagctggtataacctcctgttggacatgcagaaccgactcaataag
gtcatcaaaagtgtgggcaagatcgagcactccttatatcctttctgctcagagtacttg
tctgctggaaagcacatttcagcacattcagagagctgtgcttatcttgcactgtttctg
gaaatgtttcactag
DBGET
integrated database retrieval system
